Analysis of interatomic Contacts of Structural Units in PDB entry:
9OF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OF0 entry

There are 4 chains in PDB entry 9OF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11THR 359
B
 GLU 92VAL 464
C
 G 1 T 21
D
 C 1 C 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9OF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
21 40Right-handed alpha
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
52 74Right-handed alpha
Helix 5
AA5
A
89 94Right-handed alpha
Helix 6
AA6
A
114 119Right-handed alpha
Helix 7
AA7
A
122 127Right-handed alpha
Helix 8
AA8
A
130 134Right-handed 310
Helix 9
AA9
A
136 138Right-handed 310
Helix 10
AB1
A
139 148Right-handed alpha
Helix 11
AB2
A
184 188Right-handed 310
Helix 12
AB3
A
260 265Right-handed alpha
Helix 13
AB4
A
268 273Right-handed alpha
Helix 14
AB5
A
282 284Right-handed 310
Helix 15
AB6
A
285 300Right-handed alpha
Helix 16
AB7
A
355 359Right-handed 310
Helix 17
AB8
B
93 116Right-handed alpha
Helix 18
AB9
B
127 139Right-handed alpha
Helix 19
AC1
B
160 173Right-handed alpha
Helix 20
AC2
B
192 198Right-handed alpha
Helix 21
AC3
B
200 205Right-handed alpha
Helix 22
AC4
B
209 213Right-handed 310
Helix 23
AC5
B
214 216Right-handed 310
Helix 24
AC6
B
217 226Right-handed alpha
Helix 25
AC7
B
379 384Right-handed alpha
Helix 26
AC8
B
387 392Right-handed alpha
Helix 27
AC9
B
395 400Right-handed 310
Helix 28
AD1
B
401 403Right-handed 310
Helix 29
AD2
B
404 419Right-handed alpha
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There are 5 sheets in PDB entry 9OF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
219 228anti-parallel
Strand 4
A
189 202anti-parallel
Strand 5
A
165 174anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
243 248anti-parallel
Strand 3
A
334 343anti-parallel
Strand 4
A
316 327anti-parallel
Strand 5
A
301 303anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
243 248anti-parallel
Strand 3
A
334 343anti-parallel
Strand 4
A
316 327anti-parallel
Strand 5
A
307 310anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
174 180anti-parallel
Strand 3
B
335 343anti-parallel
Strand 4
B
303 314anti-parallel
Strand 5
B
260 268anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
454 463anti-parallel
Strand 4
B
436 447anti-parallel
Strand 5
B
423 430anti-parallel
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