Analysis of interatomic Contacts of Structural Units in PDB entry:
9OF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OF1 entry

There are 2 chains in PDB entry 9OF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	THR 608
D	MET 1	ASP 609

There are 56 helices in PDB entry 9OF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	13	19	Right-handed alpha
Helix 2	AA2	B	20	26	Right-handed 310
Helix 3	AA3	B	40	51	Right-handed alpha
Helix 4	AA4	B	72	91	Right-handed alpha
Helix 5	AA5	B	108	119	Right-handed alpha
Helix 6	AA6	B	134	138	Right-handed 310
Helix 7	AA7	B	144	153	Right-handed alpha
Helix 8	AA8	B	167	171	Right-handed 310
Helix 9	AA9	B	196	216	Right-handed alpha
Helix 10	AB1	B	224	230	Right-handed 310
Helix 11	AB2	B	231	239	Right-handed alpha
Helix 12	AB3	B	247	253	Right-handed alpha
Helix 13	AB4	B	264	266	Right-handed 310
Helix 14	AB5	B	269	278	Right-handed alpha
Helix 15	AB6	B	282	286	Right-handed 310
Helix 16	AB7	B	306	313	Right-handed alpha
Helix 17	AB8	B	324	342	Right-handed alpha
Helix 18	AB9	B	352	357	Right-handed 310
Helix 19	AC1	B	362	381	Right-handed alpha
Helix 20	AC2	B	402	420	Right-handed alpha
Helix 21	AC3	B	436	445	Right-handed alpha
Helix 22	AC4	B	448	454	Right-handed alpha
Helix 23	AC5	B	467	477	Right-handed alpha
Helix 24	AC6	B	488	491	Right-handed 310
Helix 25	AC7	B	492	503	Right-handed alpha
Helix 26	AC8	B	509	517	Right-handed alpha
Helix 27	AC9	B	532	539	Right-handed alpha
Helix 28	AD1	B	549	554	Right-handed alpha
Helix 29	AD2	B	556	568	Right-handed alpha
Helix 30	AD3	B	572	587	Right-handed alpha
Helix 31	AD4	B	590	602	Right-handed alpha
Helix 32	AD5	D	13	19	Right-handed alpha
Helix 33	AD6	D	39	54	Right-handed alpha
Helix 34	AD7	D	72	91	Right-handed alpha
Helix 35	AD8	D	107	120	Right-handed alpha
Helix 36	AD9	D	143	152	Right-handed alpha
Helix 37	AE1	D	169	173	Right-handed 310
Helix 38	AE2	D	196	211	Right-handed alpha
Helix 39	AE3	D	224	229	Right-handed 310
Helix 40	AE4	D	231	239	Right-handed alpha
Helix 41	AE5	D	247	253	Right-handed alpha
Helix 42	AE6	D	264	266	Right-handed 310
Helix 43	AE7	D	270	277	Right-handed alpha
Helix 44	AE8	D	305	314	Right-handed alpha
Helix 45	AE9	D	324	342	Right-handed alpha
Helix 46	AF1	D	362	380	Right-handed alpha
Helix 47	AF2	D	402	420	Right-handed alpha
Helix 48	AF3	D	437	446	Right-handed alpha
Helix 49	AF4	D	448	455	Right-handed alpha
Helix 50	AF5	D	467	477	Right-handed alpha
Helix 51	AF6	D	492	502	Right-handed alpha
Helix 52	AF7	D	509	517	Right-handed alpha
Helix 53	AF8	D	532	540	Right-handed alpha
Helix 54	AF9	D	556	568	Right-handed alpha
Helix 55	AG1	D	572	587	Right-handed alpha
Helix 56	AG2	D	590	602	Right-handed alpha

There are 5 sheets in PDB entry 9OF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	123	128	anti-parallel
Strand 3	B	97	100	parallel
Strand 4	B	3	8	parallel
Strand 5	B	29	34	parallel
Strand 6	B	59	63	parallel
Strand 7	B	188	190	parallel
Strand 8	B	183	184	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	344	351	parallel
Strand 3	B	388	394	parallel
Strand 4	B	426	431	parallel
Strand 5	B	457	460	parallel
Strand 6	B	482	484	parallel
Strand 7	B	505	508	parallel
Strand 8	B	542	545	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	29	35	parallel
Strand 3	D	58	64	parallel
Strand 4	D	189	192	parallel
Strand 5	D	181	183	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	129	first strand
Strand 2	D	156	162	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	262	first strand
Strand 2	D	344	351	parallel
Strand 3	D	388	395	parallel
Strand 4	D	426	431	parallel
Strand 5	D	457	462	parallel
Strand 6	D	482	485	parallel
Strand 7	D	505	508	parallel
Strand 8	D	542	545	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OF1