Analysis of interatomic Contacts of Structural Units in PDB entry:
9OF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OF2 entry

There are 6 chains in PDB entry 9OF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 18	T 44
B	A 8	C 34
C	ARG 15	THR 359
D	ASN 93	VAL 464
E	ARG 20	THR 359
F	HIS 94	VAL 464

There are 55 helices in PDB entry 9OF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	15	38	Right-handed alpha
Helix 2	AA2	C	39	41	Right-handed 310
Helix 3	AA3	C	44	51	Right-handed alpha
Helix 4	AA4	C	52	73	Right-handed alpha
Helix 5	AA5	C	89	95	Right-handed alpha
Helix 6	AA6	C	114	120	Right-handed alpha
Helix 7	AA7	C	122	127	Right-handed alpha
Helix 8	AA8	C	130	135	Right-handed 310
Helix 9	AA9	C	136	140	Right-handed 310
Helix 10	AB1	C	141	148	Right-handed alpha
Helix 11	AB2	C	184	188	Right-handed 310
Helix 12	AB3	C	231	235	Right-handed 310
Helix 13	AB4	C	259	265	Right-handed alpha
Helix 14	AB5	C	276	280	Right-handed 310
Helix 15	AB6	C	282	284	Right-handed 310
Helix 16	AB7	C	285	300	Right-handed alpha
Helix 17	AB8	C	355	359	Right-handed 310
Helix 18	AB9	D	94	116	Right-handed alpha
Helix 19	AC1	D	128	142	Right-handed alpha
Helix 20	AC2	D	160	173	Right-handed alpha
Helix 21	AC3	D	192	198	Right-handed alpha
Helix 22	AC4	D	200	205	Right-handed alpha
Helix 23	AC5	D	208	213	Right-handed 310
Helix 24	AC6	D	217	226	Right-handed alpha
Helix 25	AC7	D	379	384	Right-handed alpha
Helix 26	AC8	D	387	392	Right-handed alpha
Helix 27	AC9	D	404	416	Right-handed alpha
Helix 28	AD1	E	21	36	Right-handed alpha
Helix 29	AD2	E	44	49	Right-handed alpha
Helix 30	AD3	E	54	74	Right-handed alpha
Helix 31	AD4	E	87	89	Right-handed 310
Helix 32	AD5	E	90	95	Right-handed alpha
Helix 33	AD6	E	114	119	Right-handed alpha
Helix 34	AD7	E	123	127	Right-handed 310
Helix 35	AD8	E	130	134	Right-handed 310
Helix 36	AD9	E	136	138	Right-handed 310
Helix 37	AE1	E	139	148	Right-handed alpha
Helix 38	AE2	E	184	188	Right-handed 310
Helix 39	AE3	E	231	235	Right-handed 310
Helix 40	AE4	E	260	265	Right-handed alpha
Helix 41	AE5	E	268	272	Right-handed 310
Helix 42	AE6	E	276	280	Right-handed 310
Helix 43	AE7	E	282	284	Right-handed 310
Helix 44	AE8	E	285	299	Right-handed alpha
Helix 45	AE9	F	95	116	Right-handed alpha
Helix 46	AF1	F	129	142	Right-handed alpha
Helix 47	AF2	F	160	172	Right-handed alpha
Helix 48	AF3	F	191	194	Right-handed 310
Helix 49	AF4	F	208	213	Right-handed 310
Helix 50	AF5	F	214	216	Right-handed 310
Helix 51	AF6	F	217	226	Right-handed alpha
Helix 52	AF7	F	379	384	Right-handed alpha
Helix 53	AF8	F	395	400	Right-handed alpha
Helix 54	AF9	F	401	403	Right-handed 310
Helix 55	AG1	F	404	416	Right-handed alpha

There are 10 sheets in PDB entry 9OF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	111	first strand
Strand 2	C	98	102	anti-parallel
Strand 3	C	220	226	anti-parallel
Strand 4	C	191	201	anti-parallel
Strand 5	C	166	172	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	257	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	334	340	anti-parallel
Strand 4	C	322	327	anti-parallel
Strand 5	C	301	303	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	310	first strand
Strand 2	C	316	320	anti-parallel
Strand 3	C	342	343	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	189	first strand
Strand 2	D	175	180	anti-parallel
Strand 3	D	336	341	anti-parallel
Strand 4	D	303	313	anti-parallel
Strand 5	D	260	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	367	first strand
Strand 2	D	454	460	anti-parallel
Strand 3	D	437	447	anti-parallel
Strand 4	D	462	463	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	367	first strand
Strand 2	D	454	460	anti-parallel
Strand 3	D	437	447	anti-parallel
Strand 4	D	422	429	anti-parallel
Strand 5	F	423	427	parallel
Strand 6	F	439	447	anti-parallel
Strand 7	F	454	463	anti-parallel
Strand 8	F	363	365	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	98	101	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	189	198	anti-parallel
Strand 5	E	165	174	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	257	first strand
Strand 2	E	243	248	anti-parallel
Strand 3	E	334	343	anti-parallel
Strand 4	E	316	327	anti-parallel
Strand 5	E	301	303	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	257	first strand
Strand 2	E	243	248	anti-parallel
Strand 3	E	334	343	anti-parallel
Strand 4	E	316	327	anti-parallel
Strand 5	E	308	310	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	189	first strand
Strand 2	F	176	180	anti-parallel
Strand 3	F	336	340	anti-parallel
Strand 4	F	306	313	anti-parallel
Strand 5	F	260	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OF2