Analysis of interatomic Contacts of Structural Units in PDB entry:
9OFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OFB entry

There are 4 chains in PDB entry 9OFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 612
B
 MET 1GLU 611
C
 A 707 A 707
D
 A 709 A 709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 9OFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 19Right-handed alpha
Helix 2
AA2
A
20 22Right-handed 310
Helix 3
AA3
A
40 53Right-handed alpha
Helix 4
AA4
A
72 91Right-handed alpha
Helix 5
AA5
A
105 120Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
143 153Right-handed alpha
Helix 8
AA8
A
167 172Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
196 215Right-handed alpha
Helix 11
AB2
A
224 230Right-handed 310
Helix 12
AB3
A
231 239Right-handed alpha
Helix 13
AB4
A
247 253Right-handed alpha
Helix 14
AB5
A
264 266Right-handed 310
Helix 15
AB6
A
270 279Right-handed alpha
Helix 16
AB7
A
282 286Right-handed 310
Helix 17
AB8
A
305 313Right-handed alpha
Helix 18
AB9
A
324 342Right-handed alpha
Helix 19
AC1
A
352 356Right-handed 310
Helix 20
AC2
A
362 381Right-handed alpha
Helix 21
AC3
A
382 386Right-handed 310
Helix 22
AC4
A
403 420Right-handed alpha
Helix 23
AC5
A
445 447Right-handed 310
Helix 24
AC6
A
448 454Right-handed alpha
Helix 25
AC7
A
468 477Right-handed alpha
Helix 26
AC8
A
492 503Right-handed alpha
Helix 27
AC9
A
509 517Right-handed alpha
Helix 28
AD1
A
532 539Right-handed alpha
Helix 29
AD2
A
549 554Right-handed alpha
Helix 30
AD3
A
556 568Right-handed alpha
Helix 31
AD4
A
572 587Right-handed alpha
Helix 32
AD5
A
590 602Right-handed alpha
Helix 33
AD6
B
13 19Right-handed alpha
Helix 34
AD7
B
20 21Right-handed 310
Helix 35
AD8
B
22 26Right-handed 310
Helix 36
AD9
B
37 39Right-handed 310
Helix 37
AE1
B
40 54Right-handed alpha
Helix 38
AE2
B
72 91Right-handed alpha
Helix 39
AE3
B
93 95Right-handed 310
Helix 40
AE4
B
105 120Right-handed alpha
Helix 41
AE5
B
143 154Right-handed alpha
Helix 42
AE6
B
167 172Right-handed alpha
Helix 43
AE7
B
196 217Right-handed alpha
Helix 44
AE8
B
224 230Right-handed 310
Helix 45
AE9
B
231 239Right-handed alpha
Helix 46
AF1
B
247 253Right-handed alpha
Helix 47
AF2
B
264 266Right-handed 310
Helix 48
AF3
B
270 278Right-handed alpha
Helix 49
AF4
B
282 286Right-handed 310
Helix 50
AF5
B
305 313Right-handed alpha
Helix 51
AF6
B
324 342Right-handed alpha
Helix 52
AF7
B
352 356Right-handed 310
Helix 53
AF8
B
362 380Right-handed alpha
Helix 54
AF9
B
403 420Right-handed alpha
Helix 55
AG1
B
444 447Right-handed 310
Helix 56
AG2
B
448 454Right-handed alpha
Helix 57
AG3
B
468 477Right-handed alpha
Helix 58
AG4
B
488 491Right-handed 310
Helix 59
AG5
B
492 503Right-handed alpha
Helix 60
AG6
B
509 517Right-handed alpha
Helix 61
AG7
B
532 539Right-handed alpha
Helix 62
AG8
B
549 554Right-handed alpha
Helix 63
AG9
B
556 568Right-handed alpha
Helix 64
AH1
B
572 587Right-handed alpha
Helix 65
AH2
B
590 602Right-handed alpha
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There are 5 sheets in PDB entry 9OFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
29 33parallel
Strand 3
A
3 7parallel
Strand 4
A
97 100parallel
Strand 5
A
123 129parallel
Strand 6
A
156 160anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
188 190anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 262first strand
Strand 2
A
344 351parallel
Strand 3
A
388 394parallel
Strand 4
A
426 431parallel
Strand 5
A
457 461parallel
Strand 6
A
482 484parallel
Strand 7
A
505 508parallel
Strand 8
A
543 545parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 164first strand
Strand 2
B
121 129anti-parallel
Strand 3
B
97 100parallel
Strand 4
B
3 7parallel
Strand 5
B
29 34parallel
Strand 6
B
58 64parallel
Strand 7
B
188 192parallel
Strand 8
B
181 182anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 262first strand
Strand 2
B
344 351parallel
Strand 3
B
388 394parallel
Strand 4
B
426 432parallel
Strand 5
B
457 461parallel
Strand 6
B
482 484parallel
Strand 7
B
505 508parallel
Strand 8
B
542 545parallel
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