Analysis of interatomic Contacts of Structural Units in PDB entry:
9OFD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OFD entry

There are 8 chains in PDB entry 9OFD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 612
B	MET 1	GLU 611
C	A 707	A 707
D	A 709	A 709
G	ILE 219	GLN 612
H	ILE 219	GLU 611
K	ILE 219	GLN 612
L	ILE 219	GLU 611

There are140 helices in PDB entry 9OFD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	19	Right-handed alpha
Helix 2	AA2	A	39	53	Right-handed alpha
Helix 3	AA3	A	72	91	Right-handed alpha
Helix 4	AA4	A	105	120	Right-handed alpha
Helix 5	AA5	A	134	138	Right-handed 310
Helix 6	AA6	A	143	153	Right-handed alpha
Helix 7	AA7	A	167	172	Right-handed alpha
Helix 8	AA8	A	196	216	Right-handed alpha
Helix 9	AA9	A	224	230	Right-handed 310
Helix 10	AB1	A	231	239	Right-handed alpha
Helix 11	AB2	A	247	253	Right-handed alpha
Helix 12	AB3	A	269	279	Right-handed alpha
Helix 13	AB4	A	305	313	Right-handed alpha
Helix 14	AB5	A	324	342	Right-handed alpha
Helix 15	AB6	A	352	357	Right-handed 310
Helix 16	AB7	A	362	380	Right-handed alpha
Helix 17	AB8	A	403	420	Right-handed alpha
Helix 18	AB9	A	448	454	Right-handed alpha
Helix 19	AC1	A	467	477	Right-handed alpha
Helix 20	AC2	A	488	491	Right-handed 310
Helix 21	AC3	A	492	503	Right-handed alpha
Helix 22	AC4	A	509	517	Right-handed alpha
Helix 23	AC5	A	532	539	Right-handed alpha
Helix 24	AC6	A	549	554	Right-handed alpha
Helix 25	AC7	A	556	568	Right-handed alpha
Helix 26	AC8	A	572	587	Right-handed alpha
Helix 27	AC9	A	590	602	Right-handed alpha
Helix 28	AD1	B	13	19	Right-handed alpha
Helix 29	AD2	B	20	21	Right-handed 310
Helix 30	AD3	B	22	26	Right-handed 310
Helix 31	AD4	B	37	39	Right-handed 310
Helix 32	AD5	B	40	54	Right-handed alpha
Helix 33	AD6	B	72	91	Right-handed alpha
Helix 34	AD7	B	93	95	Right-handed 310
Helix 35	AD8	B	105	120	Right-handed alpha
Helix 36	AD9	B	143	154	Right-handed alpha
Helix 37	AE1	B	174	178	Right-handed 310
Helix 38	AE2	B	196	215	Right-handed alpha
Helix 39	AE3	B	224	230	Right-handed 310
Helix 40	AE4	B	231	239	Right-handed alpha
Helix 41	AE5	B	247	254	Right-handed alpha
Helix 42	AE6	B	264	266	Right-handed 310
Helix 43	AE7	B	269	278	Right-handed alpha
Helix 44	AE8	B	282	286	Right-handed 310
Helix 45	AE9	B	305	313	Right-handed alpha
Helix 46	AF1	B	317	321	Right-handed 310
Helix 47	AF2	B	324	342	Right-handed alpha
Helix 48	AF3	B	362	380	Right-handed alpha
Helix 49	AF4	B	382	386	Right-handed 310
Helix 50	AF5	B	403	420	Right-handed alpha
Helix 51	AF6	B	448	454	Right-handed alpha
Helix 52	AF7	B	467	477	Right-handed alpha
Helix 53	AF8	B	492	503	Right-handed alpha
Helix 54	AF9	B	509	517	Right-handed alpha
Helix 55	AG1	B	532	539	Right-handed alpha
Helix 56	AG2	B	549	554	Right-handed alpha
Helix 57	AG3	B	556	568	Right-handed alpha
Helix 58	AG4	B	572	587	Right-handed alpha
Helix 59	AG5	B	590	602	Right-handed alpha
Helix 60	AG6	G	231	239	Right-handed alpha
Helix 61	AG7	G	247	253	Right-handed alpha
Helix 62	AG8	G	264	266	Right-handed 310
Helix 63	AG9	G	269	276	Right-handed alpha
Helix 64	AH1	G	305	311	Right-handed alpha
Helix 65	AH2	G	324	342	Right-handed alpha
Helix 66	AH3	G	352	356	Right-handed 310
Helix 67	AH4	G	362	380	Right-handed alpha
Helix 68	AH5	G	382	386	Right-handed 310
Helix 69	AH6	G	402	420	Right-handed alpha
Helix 70	AH7	G	448	454	Right-handed alpha
Helix 71	AH8	G	467	477	Right-handed alpha
Helix 72	AH9	G	488	491	Right-handed 310
Helix 73	AI1	G	492	503	Right-handed alpha
Helix 74	AI2	G	509	517	Right-handed alpha
Helix 75	AI3	G	532	539	Right-handed alpha
Helix 76	AI4	G	549	554	Right-handed alpha
Helix 77	AI5	G	556	568	Right-handed alpha
Helix 78	AI6	G	572	587	Right-handed alpha
Helix 79	AI7	G	590	602	Right-handed alpha
Helix 80	AI8	H	224	230	Right-handed 310
Helix 81	AI9	H	233	239	Right-handed alpha
Helix 82	AJ1	H	247	253	Right-handed alpha
Helix 83	AJ2	H	264	266	Right-handed 310
Helix 84	AJ3	H	270	278	Right-handed alpha
Helix 85	AJ4	H	282	286	Right-handed 310
Helix 86	AJ5	H	305	314	Right-handed alpha
Helix 87	AJ6	H	324	342	Right-handed alpha
Helix 88	AJ7	H	352	357	Right-handed 310
Helix 89	AJ8	H	362	380	Right-handed alpha
Helix 90	AJ9	H	403	420	Right-handed alpha
Helix 91	AK1	H	432	435	Right-handed 310
Helix 92	AK2	H	437	444	Right-handed alpha
Helix 93	AK3	H	448	454	Right-handed alpha
Helix 94	AK4	H	468	477	Right-handed alpha
Helix 95	AK5	H	492	503	Right-handed alpha
Helix 96	AK6	H	509	517	Right-handed alpha
Helix 97	AK7	H	532	539	Right-handed alpha
Helix 98	AK8	H	556	568	Right-handed alpha
Helix 99	AK9	H	572	587	Right-handed alpha
Helix 100	AL1	H	590	602	Right-handed alpha
Helix 101	AL2	K	231	239	Right-handed alpha
Helix 102	AL3	K	247	252	Right-handed alpha
Helix 103	AL4	K	264	266	Right-handed 310
Helix 104	AL5	K	271	279	Right-handed alpha
Helix 105	AL6	K	306	313	Right-handed alpha
Helix 106	AL7	K	318	323	Right-handed alpha
Helix 107	AL8	K	324	342	Right-handed alpha
Helix 108	AL9	K	352	356	Right-handed 310
Helix 109	AM1	K	362	381	Right-handed alpha
Helix 110	AM2	K	403	420	Right-handed alpha
Helix 111	AM3	K	445	447	Right-handed 310
Helix 112	AM4	K	448	454	Right-handed alpha
Helix 113	AM5	K	467	477	Right-handed alpha
Helix 114	AM6	K	492	500	Right-handed alpha
Helix 115	AM7	K	509	517	Right-handed alpha
Helix 116	AM8	K	532	540	Right-handed alpha
Helix 117	AM9	K	549	554	Right-handed alpha
Helix 118	AN1	K	556	568	Right-handed alpha
Helix 119	AN2	K	572	587	Right-handed alpha
Helix 120	AN3	K	590	603	Right-handed alpha
Helix 121	AN4	L	224	228	Right-handed 310
Helix 122	AN5	L	231	238	Right-handed alpha
Helix 123	AN6	L	247	252	Right-handed alpha
Helix 124	AN7	L	270	278	Right-handed alpha
Helix 125	AN8	L	305	314	Right-handed alpha
Helix 126	AN9	L	324	342	Right-handed alpha
Helix 127	AO1	L	352	356	Right-handed 310
Helix 128	AO2	L	362	381	Right-handed alpha
Helix 129	AO3	L	382	386	Right-handed 310
Helix 130	AO4	L	397	402	Right-handed 310
Helix 131	AO5	L	403	420	Right-handed alpha
Helix 132	AO6	L	437	444	Right-handed alpha
Helix 133	AO7	L	448	454	Right-handed alpha
Helix 134	AO8	L	467	477	Right-handed alpha
Helix 135	AO9	L	492	502	Right-handed alpha
Helix 136	AP1	L	509	515	Right-handed alpha
Helix 137	AP2	L	532	540	Right-handed alpha
Helix 138	AP3	L	556	564	Right-handed alpha
Helix 139	AP4	L	572	587	Right-handed alpha
Helix 140	AP5	L	592	602	Right-handed alpha

There are 8 sheets in PDB entry 9OFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	164	first strand
Strand 2	A	121	129	anti-parallel
Strand 3	A	97	100	parallel
Strand 4	A	3	8	parallel
Strand 5	A	29	34	parallel
Strand 6	A	61	64	parallel
Strand 7	A	188	192	parallel
Strand 8	A	181	185	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	262	first strand
Strand 2	A	344	351	parallel
Strand 3	A	388	395	parallel
Strand 4	A	426	431	parallel
Strand 5	A	457	461	parallel
Strand 6	A	482	484	parallel
Strand 7	A	505	508	parallel
Strand 8	A	542	545	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	123	129	anti-parallel
Strand 3	B	97	100	parallel
Strand 4	B	3	7	parallel
Strand 5	B	29	34	parallel
Strand 6	B	58	64	parallel
Strand 7	B	188	192	parallel
Strand 8	B	181	185	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	344	351	parallel
Strand 3	B	388	396	parallel
Strand 4	B	426	432	parallel
Strand 5	B	457	461	parallel
Strand 6	B	482	484	parallel
Strand 7	B	505	508	parallel
Strand 8	B	542	545	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	256	262	first strand
Strand 2	G	344	351	parallel
Strand 3	G	388	395	parallel
Strand 4	G	426	431	parallel
Strand 5	G	457	460	parallel
Strand 6	G	482	484	parallel
Strand 7	G	505	508	parallel
Strand 8	G	542	545	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	256	262	first strand
Strand 2	H	344	351	parallel
Strand 3	H	388	394	parallel
Strand 4	H	426	431	parallel
Strand 5	H	457	461	parallel
Strand 6	H	482	484	parallel
Strand 7	H	505	508	parallel
Strand 8	H	542	545	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	256	262	first strand
Strand 2	K	344	351	parallel
Strand 3	K	388	396	parallel
Strand 4	K	426	432	parallel
Strand 5	K	457	461	parallel
Strand 6	K	482	484	parallel
Strand 7	K	505	508	parallel
Strand 8	K	542	545	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	256	262	first strand
Strand 2	L	344	351	parallel
Strand 3	L	388	394	parallel
Strand 4	L	426	431	parallel
Strand 5	L	457	461	parallel
Strand 6	L	482	484	parallel
Strand 7	L	505	508	parallel
Strand 8	L	542	545	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OFD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OFD