Analysis of interatomic Contacts of Structural Units in PDB entry:
9OFE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OFE entry

There are 10 chains in PDB entry 9OFE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 612
B	MET 1	GLU 611
C	A 707	A 707
D	A 709	A 709
G	MET 1	GLN 612
H	MET 1	GLU 611
K	ILE 219	GLN 612
L	ILE 219	GLU 611
J	A 719	A 719
I	A 717	A 717

There are154 helices in PDB entry 9OFE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	19	Right-handed alpha
Helix 2	AA2	A	39	53	Right-handed alpha
Helix 3	AA3	A	73	91	Right-handed alpha
Helix 4	AA4	A	105	120	Right-handed alpha
Helix 5	AA5	A	134	138	Right-handed 310
Helix 6	AA6	A	143	154	Right-handed alpha
Helix 7	AA7	A	167	171	Right-handed 310
Helix 8	AA8	A	174	178	Right-handed 310
Helix 9	AA9	A	196	216	Right-handed alpha
Helix 10	AB1	A	224	230	Right-handed 310
Helix 11	AB2	A	231	238	Right-handed alpha
Helix 12	AB3	A	247	253	Right-handed alpha
Helix 13	AB4	A	264	266	Right-handed 310
Helix 14	AB5	A	270	279	Right-handed alpha
Helix 15	AB6	A	305	313	Right-handed alpha
Helix 16	AB7	A	324	342	Right-handed alpha
Helix 17	AB8	A	352	357	Right-handed 310
Helix 18	AB9	A	362	380	Right-handed alpha
Helix 19	AC1	A	382	386	Right-handed 310
Helix 20	AC2	A	403	420	Right-handed alpha
Helix 21	AC3	A	444	447	Right-handed 310
Helix 22	AC4	A	448	454	Right-handed alpha
Helix 23	AC5	A	467	477	Right-handed alpha
Helix 24	AC6	A	492	503	Right-handed alpha
Helix 25	AC7	A	509	517	Right-handed alpha
Helix 26	AC8	A	532	539	Right-handed alpha
Helix 27	AC9	A	549	554	Right-handed alpha
Helix 28	AD1	A	556	568	Right-handed alpha
Helix 29	AD2	A	572	587	Right-handed alpha
Helix 30	AD3	A	590	602	Right-handed alpha
Helix 31	AD4	B	13	19	Right-handed alpha
Helix 32	AD5	B	37	39	Right-handed 310
Helix 33	AD6	B	40	54	Right-handed alpha
Helix 34	AD7	B	72	91	Right-handed alpha
Helix 35	AD8	B	105	120	Right-handed alpha
Helix 36	AD9	B	143	154	Right-handed alpha
Helix 37	AE1	B	169	173	Right-handed 310
Helix 38	AE2	B	174	178	Right-handed 310
Helix 39	AE3	B	196	217	Right-handed alpha
Helix 40	AE4	B	224	230	Right-handed 310
Helix 41	AE5	B	231	239	Right-handed alpha
Helix 42	AE6	B	247	253	Right-handed alpha
Helix 43	AE7	B	264	266	Right-handed 310
Helix 44	AE8	B	270	279	Right-handed alpha
Helix 45	AE9	B	282	286	Right-handed 310
Helix 46	AF1	B	305	313	Right-handed alpha
Helix 47	AF2	B	324	341	Right-handed alpha
Helix 48	AF3	B	352	357	Right-handed 310
Helix 49	AF4	B	362	380	Right-handed alpha
Helix 50	AF5	B	382	386	Right-handed 310
Helix 51	AF6	B	405	420	Right-handed alpha
Helix 52	AF7	B	445	447	Right-handed 310
Helix 53	AF8	B	448	455	Right-handed alpha
Helix 54	AF9	B	468	477	Right-handed alpha
Helix 55	AG1	B	488	491	Right-handed 310
Helix 56	AG2	B	492	502	Right-handed alpha
Helix 57	AG3	B	509	517	Right-handed alpha
Helix 58	AG4	B	532	539	Right-handed alpha
Helix 59	AG5	B	549	554	Right-handed alpha
Helix 60	AG6	B	556	568	Right-handed alpha
Helix 61	AG7	B	572	587	Right-handed alpha
Helix 62	AG8	B	590	602	Right-handed alpha
Helix 63	AG9	G	13	19	Right-handed alpha
Helix 64	AH1	G	40	53	Right-handed alpha
Helix 65	AH2	G	72	91	Right-handed alpha
Helix 66	AH3	G	105	120	Right-handed alpha
Helix 67	AH4	G	134	138	Right-handed 310
Helix 68	AH5	G	143	154	Right-handed alpha
Helix 69	AH6	G	174	178	Right-handed 310
Helix 70	AH7	G	196	215	Right-handed alpha
Helix 71	AH8	G	224	230	Right-handed 310
Helix 72	AH9	G	231	239	Right-handed alpha
Helix 73	AI1	G	247	252	Right-handed alpha
Helix 74	AI2	G	270	278	Right-handed alpha
Helix 75	AI3	G	305	313	Right-handed alpha
Helix 76	AI4	G	324	342	Right-handed alpha
Helix 77	AI5	G	352	356	Right-handed 310
Helix 78	AI6	G	362	380	Right-handed alpha
Helix 79	AI7	G	402	420	Right-handed alpha
Helix 80	AI8	G	436	446	Right-handed alpha
Helix 81	AI9	G	448	454	Right-handed alpha
Helix 82	AJ1	G	467	477	Right-handed alpha
Helix 83	AJ2	G	492	503	Right-handed alpha
Helix 84	AJ3	G	509	518	Right-handed alpha
Helix 85	AJ4	G	532	539	Right-handed alpha
Helix 86	AJ5	G	556	568	Right-handed alpha
Helix 87	AJ6	G	572	587	Right-handed alpha
Helix 88	AJ7	G	590	602	Right-handed alpha
Helix 89	AJ8	H	13	19	Right-handed alpha
Helix 90	AJ9	H	20	23	Right-handed 310
Helix 91	AK1	H	40	54	Right-handed alpha
Helix 92	AK2	H	72	91	Right-handed alpha
Helix 93	AK3	H	105	120	Right-handed alpha
Helix 94	AK4	H	143	153	Right-handed alpha
Helix 95	AK5	H	196	217	Right-handed alpha
Helix 96	AK6	H	224	230	Right-handed 310
Helix 97	AK7	H	231	238	Right-handed alpha
Helix 98	AK8	H	264	266	Right-handed 310
Helix 99	AK9	H	270	278	Right-handed alpha
Helix 100	AL1	H	305	313	Right-handed alpha
Helix 101	AL2	H	318	323	Right-handed alpha
Helix 102	AL3	H	326	341	Right-handed alpha
Helix 103	AL4	H	352	357	Right-handed 310
Helix 104	AL5	H	362	380	Right-handed alpha
Helix 105	AL6	H	403	420	Right-handed alpha
Helix 106	AL7	H	442	446	Right-handed alpha
Helix 107	AL8	H	448	454	Right-handed alpha
Helix 108	AL9	H	467	477	Right-handed alpha
Helix 109	AM1	H	492	502	Right-handed alpha
Helix 110	AM2	H	509	515	Right-handed alpha
Helix 111	AM3	H	532	539	Right-handed alpha
Helix 112	AM4	H	556	568	Right-handed alpha
Helix 113	AM5	H	572	587	Right-handed alpha
Helix 114	AM6	H	590	602	Right-handed alpha
Helix 115	AM7	K	226	230	Right-handed 310
Helix 116	AM8	K	231	239	Right-handed alpha
Helix 117	AM9	K	247	254	Right-handed alpha
Helix 118	AN1	K	264	266	Right-handed 310
Helix 119	AN2	K	270	279	Right-handed alpha
Helix 120	AN3	K	307	312	Right-handed alpha
Helix 121	AN4	K	313	315	Right-handed 310
Helix 122	AN5	K	324	342	Right-handed alpha
Helix 123	AN6	K	352	356	Right-handed 310
Helix 124	AN7	K	362	380	Right-handed alpha
Helix 125	AN8	K	402	420	Right-handed alpha
Helix 126	AN9	K	448	454	Right-handed alpha
Helix 127	AO1	K	468	477	Right-handed alpha
Helix 128	AO2	K	492	502	Right-handed alpha
Helix 129	AO3	K	509	517	Right-handed alpha
Helix 130	AO4	K	532	540	Right-handed alpha
Helix 131	AO5	K	556	568	Right-handed alpha
Helix 132	AO6	K	572	587	Right-handed alpha
Helix 133	AO7	K	590	602	Right-handed alpha
Helix 134	AO8	L	224	230	Right-handed 310
Helix 135	AO9	L	231	240	Right-handed alpha
Helix 136	AP1	L	247	253	Right-handed alpha
Helix 137	AP2	L	264	266	Right-handed 310
Helix 138	AP3	L	270	278	Right-handed alpha
Helix 139	AP4	L	282	286	Right-handed 310
Helix 140	AP5	L	306	314	Right-handed alpha
Helix 141	AP6	L	324	342	Right-handed alpha
Helix 142	AP7	L	352	357	Right-handed 310
Helix 143	AP8	L	362	380	Right-handed alpha
Helix 144	AP9	L	382	386	Right-handed 310
Helix 145	AQ1	L	402	420	Right-handed alpha
Helix 146	AQ2	L	439	446	Right-handed alpha
Helix 147	AQ3	L	448	455	Right-handed alpha
Helix 148	AQ4	L	467	477	Right-handed alpha
Helix 149	AQ5	L	492	502	Right-handed alpha
Helix 150	AQ6	L	509	517	Right-handed alpha
Helix 151	AQ7	L	532	539	Right-handed alpha
Helix 152	AQ8	L	556	568	Right-handed alpha
Helix 153	AQ9	L	572	587	Right-handed alpha
Helix 154	AR1	L	590	602	Right-handed alpha

There are 12 sheets in PDB entry 9OFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	160	first strand
Strand 2	A	123	129	anti-parallel
Strand 3	A	97	100	parallel
Strand 4	A	3	7	parallel
Strand 5	A	29	35	parallel
Strand 6	A	61	64	parallel
Strand 7	A	188	192	parallel
Strand 8	A	181	185	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	262	first strand
Strand 2	A	344	351	parallel
Strand 3	A	388	394	parallel
Strand 4	A	426	431	parallel
Strand 5	A	457	461	parallel
Strand 6	A	482	484	parallel
Strand 7	A	505	508	parallel
Strand 8	A	542	545	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	123	126	anti-parallel
Strand 3	B	97	100	parallel
Strand 4	B	3	6	parallel
Strand 5	B	29	34	parallel
Strand 6	B	58	64	parallel
Strand 7	B	189	192	parallel
Strand 8	B	181	184	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	262	first strand
Strand 2	B	344	351	parallel
Strand 3	B	388	395	parallel
Strand 4	B	426	431	parallel
Strand 5	B	457	461	parallel
Strand 6	B	482	484	parallel
Strand 7	B	505	508	parallel
Strand 8	B	542	545	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	160	first strand
Strand 2	G	123	129	anti-parallel
Strand 3	G	97	100	parallel
Strand 4	G	3	8	parallel
Strand 5	G	29	34	parallel
Strand 6	G	61	64	parallel
Strand 7	G	188	192	parallel
Strand 8	G	181	184	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	256	262	first strand
Strand 2	G	344	351	parallel
Strand 3	G	388	394	parallel
Strand 4	G	426	431	parallel
Strand 5	G	457	461	parallel
Strand 6	G	482	484	parallel
Strand 7	G	505	508	parallel
Strand 8	G	542	545	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	30	34	parallel
Strand 3	H	4	7	parallel
Strand 4	H	98	100	parallel
Strand 5	H	123	125	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	129	first strand
Strand 2	H	156	158	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	181	184	first strand
Strand 2	H	189	192	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	256	262	first strand
Strand 2	H	344	351	parallel
Strand 3	H	388	394	parallel
Strand 4	H	426	431	parallel
Strand 5	H	457	461	parallel
Strand 6	H	482	484	parallel
Strand 7	H	505	508	parallel
Strand 8	H	542	545	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	256	262	first strand
Strand 2	K	344	351	parallel
Strand 3	K	388	394	parallel
Strand 4	K	426	431	parallel
Strand 5	K	457	460	parallel
Strand 6	K	482	484	parallel
Strand 7	K	505	508	parallel
Strand 8	K	542	545	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	256	262	first strand
Strand 2	L	344	351	parallel
Strand 3	L	388	395	parallel
Strand 4	L	426	431	parallel
Strand 5	L	457	461	parallel
Strand 6	L	482	484	parallel
Strand 7	L	505	508	parallel
Strand 8	L	542	545	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OFE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OFE