Analysis of interatomic Contacts of Structural Units in PDB entry:
9OFQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OFQ entry

There are 5 chains in PDB entry 9OFQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	CYS 32	TYR 1043
A	CYS 32	TYR 1043
H	VAL 2	VAL 111
L	ILE 2	LYS 107
B	CYS 32	TYR 1043

There are 77 helices in PDB entry 9OFQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	256	265	Right-handed alpha
Helix 2	AA2	C	518	522	Right-handed 310
Helix 3	AA3	C	605	612	Right-handed alpha
Helix 4	AA4	C	614	622	Right-handed alpha
Helix 5	AA5	C	624	650	Right-handed alpha
Helix 6	AA6	C	653	658	Right-handed alpha
Helix 7	AA7	C	659	660	Right-handed 310
Helix 8	AA8	C	661	665	Right-handed 310
Helix 9	AA9	C	690	697	Right-handed alpha
Helix 10	AB1	C	721	729	Right-handed alpha
Helix 11	AB2	C	739	754	Right-handed alpha
Helix 12	AB3	C	759	763	Right-handed 310
Helix 13	AB4	C	766	779	Right-handed alpha
Helix 14	AB5	C	787	809	Right-handed alpha
Helix 15	AB6	C	811	817	Right-handed 310
Helix 16	AB7	C	818	837	Right-handed alpha
Helix 17	AB8	C	839	848	Right-handed alpha
Helix 18	AB9	C	849	851	Right-handed 310
Helix 19	AC1	C	859	865	Right-handed alpha
Helix 20	AC2	C	868	915	Right-handed alpha
Helix 21	AC3	C	1002	1004	Right-handed 310
Helix 22	AC4	C	1020	1027	Right-handed 310
Helix 23	AC5	C	1033	1042	Right-handed alpha
Helix 24	AC6	A	148	153	Right-handed alpha
Helix 25	AC7	A	256	265	Right-handed alpha
Helix 26	AC8	A	332	336	Right-handed 310
Helix 27	AC9	A	518	522	Right-handed 310
Helix 28	AD1	A	605	612	Right-handed alpha
Helix 29	AD2	A	614	622	Right-handed alpha
Helix 30	AD3	A	626	650	Right-handed alpha
Helix 31	AD4	A	653	658	Right-handed alpha
Helix 32	AD5	A	662	666	Right-handed 310
Helix 33	AD6	A	669	673	Right-handed 310
Helix 34	AD7	A	690	696	Right-handed alpha
Helix 35	AD8	A	700	704	Right-handed 310
Helix 36	AD9	A	709	716	Right-handed alpha
Helix 37	AE1	A	721	729	Right-handed alpha
Helix 38	AE2	A	739	754	Right-handed alpha
Helix 39	AE3	A	759	763	Right-handed 310
Helix 40	AE4	A	766	779	Right-handed alpha
Helix 41	AE5	A	787	809	Right-handed alpha
Helix 42	AE6	A	811	815	Right-handed 310
Helix 43	AE7	A	818	848	Right-handed alpha
Helix 44	AE8	A	849	851	Right-handed 310
Helix 45	AE9	A	860	865	Right-handed alpha
Helix 46	AF1	A	868	915	Right-handed alpha
Helix 47	AF2	A	1002	1004	Right-handed 310
Helix 48	AF3	A	1022	1027	Right-handed 310
Helix 49	AF4	A	1033	1039	Right-handed alpha
Helix 50	AF5	H	28	32	Right-handed 310
Helix 51	AF6	H	83	87	Right-handed 310
Helix 52	AF7	L	79	83	Right-handed 310
Helix 53	AF8	B	148	153	Right-handed alpha
Helix 54	AF9	B	256	266	Right-handed alpha
Helix 55	AG1	B	518	522	Right-handed 310
Helix 56	AG2	B	605	612	Right-handed alpha
Helix 57	AG3	B	614	622	Right-handed alpha
Helix 58	AG4	B	626	650	Right-handed alpha
Helix 59	AG5	B	653	658	Right-handed alpha
Helix 60	AG6	B	659	660	Right-handed 310
Helix 61	AG7	B	661	665	Right-handed 310
Helix 62	AG8	B	690	697	Right-handed alpha
Helix 63	AG9	B	709	716	Right-handed alpha
Helix 64	AH1	B	721	728	Right-handed alpha
Helix 65	AH2	B	739	754	Right-handed alpha
Helix 66	AH3	B	759	763	Right-handed 310
Helix 67	AH4	B	766	777	Right-handed alpha
Helix 68	AH5	B	788	809	Right-handed alpha
Helix 69	AH6	B	814	817	Right-handed 310
Helix 70	AH7	B	818	848	Right-handed alpha
Helix 71	AH8	B	849	851	Right-handed 310
Helix 72	AH9	B	859	867	Right-handed alpha
Helix 73	AI1	B	868	915	Right-handed alpha
Helix 74	AI2	B	1002	1004	Right-handed 310
Helix 75	AI3	B	1023	1027	Right-handed 310
Helix 76	AI4	B	1035	1040	Right-handed alpha
Helix 77	AI5	B	1041	1043	Right-handed 310

There are 39 sheets in PDB entry 9OFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	B	470	472	parallel
Strand 3	B	478	482	anti-parallel
Strand 4	B	489	493	anti-parallel
Strand 5	B	452	460	anti-parallel
Strand 6	B	444	449	anti-parallel
Strand 7	B	287	290	parallel
Strand 8	B	437	438	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	83	first strand
Strand 2	C	231	244	anti-parallel
Strand 3	C	116	119	anti-parallel
Strand 4	C	193	196	anti-parallel
Strand 5	C	200	203	anti-parallel
Strand 6	C	206	210	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	83	first strand
Strand 2	C	231	244	anti-parallel
Strand 3	C	247	253	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	130	135	anti-parallel
Strand 4	C	141	146	anti-parallel
Strand 5	C	167	174	anti-parallel
Strand 6	C	177	184	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	C	499	504	anti-parallel
Strand 3	C	507	513	anti-parallel
Strand 4	C	532	535	anti-parallel
Strand 5	C	524	527	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	438	first strand
Strand 2	C	287	290	anti-parallel
Strand 3	C	444	449	parallel
Strand 4	C	452	460	anti-parallel
Strand 5	C	489	493	anti-parallel
Strand 6	C	478	482	anti-parallel
Strand 7	C	470	472	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	546	548	first strand
Strand 2	C	551	553	anti-parallel
Strand 3	C	559	561	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	566	first strand
Strand 2	A	651	652	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	596	first strand
Strand 2	C	942	961	anti-parallel
Strand 3	C	930	939	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	596	first strand
Strand 2	C	942	961	anti-parallel
Strand 3	C	979	984	anti-parallel
Strand 4	C	987	992	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	602	604	first strand
Strand 2	C	731	733	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	652	first strand
Strand 2	B	565	566	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1009	first strand
Strand 2	C	970	974	anti-parallel
Strand 3	C	964	966	anti-parallel
Strand 4	C	1017	1019	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	83	first strand
Strand 2	A	228	244	anti-parallel
Strand 3	A	116	125	anti-parallel
Strand 4	A	190	196	anti-parallel
Strand 5	A	200	203	anti-parallel
Strand 6	A	206	210	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	83	first strand
Strand 2	A	228	244	anti-parallel
Strand 3	A	247	253	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	216	218	anti-parallel
Strand 3	A	132	136	anti-parallel
Strand 4	A	139	146	anti-parallel
Strand 5	A	167	173	anti-parallel
Strand 6	A	178	184	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	277	first strand
Strand 2	A	499	504	anti-parallel
Strand 3	A	507	513	anti-parallel
Strand 4	A	532	535	anti-parallel
Strand 5	A	524	527	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	445	449	parallel
Strand 4	A	452	460	anti-parallel
Strand 5	A	489	493	anti-parallel
Strand 6	A	478	482	anti-parallel
Strand 7	A	470	472	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	327	first strand
Strand 2	A	298	308	anti-parallel
Strand 3	A	344	351	parallel
Strand 4	A	408	425	parallel
Strand 5	A	394	402	anti-parallel
Strand 6	A	358	362	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	379	386	anti-parallel
Strand 3	A	408	425	anti-parallel
Strand 4	A	344	351	parallel
Strand 5	H	100	100	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	548	first strand
Strand 2	A	551	553	anti-parallel
Strand 3	A	559	561	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	596	first strand
Strand 2	A	942	961	anti-parallel
Strand 3	A	930	939	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	596	first strand
Strand 2	A	942	961	anti-parallel
Strand 3	A	979	984	anti-parallel
Strand 4	A	987	992	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	731	733	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1009	first strand
Strand 2	A	970	974	anti-parallel
Strand 3	A	964	966	anti-parallel
Strand 4	A	1017	1019	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	20	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	102	103	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	84	first strand
Strand 2	B	228	244	anti-parallel
Strand 3	B	116	125	anti-parallel
Strand 4	B	190	196	anti-parallel
Strand 5	B	200	203	anti-parallel
Strand 6	B	206	210	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	84	first strand
Strand 2	B	228	244	anti-parallel
Strand 3	B	247	253	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	216	219	anti-parallel
Strand 3	B	132	136	anti-parallel
Strand 4	B	139	146	anti-parallel
Strand 5	B	167	173	anti-parallel
Strand 6	B	181	184	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	499	503	anti-parallel
Strand 3	B	508	513	anti-parallel
Strand 4	B	532	535	anti-parallel
Strand 5	B	524	527	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	548	first strand
Strand 2	B	551	553	anti-parallel
Strand 3	B	559	561	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	596	first strand
Strand 2	B	942	961	anti-parallel
Strand 3	B	930	939	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	596	first strand
Strand 2	B	942	961	anti-parallel
Strand 3	B	979	984	anti-parallel
Strand 4	B	987	992	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	604	first strand
Strand 2	B	731	733	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1006	1009	first strand
Strand 2	B	970	974	anti-parallel
Strand 3	B	964	966	anti-parallel
Strand 4	B	1017	1019	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OFQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OFQ