Analysis of interatomic Contacts of Structural Units in PDB entry:
9OGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OGB entry

There are 5 chains in PDB entry 9OGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8LYS 1051
B
 VAL 10VAL 179
C
 THR 53GLU 288
E
 TYR 18CYS 112
F
 MET 1GLN 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 9OGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
15 18Right-handed 310
Helix 3
AA3
A
24 37Right-handed alpha
Helix 4
AA4
A
39 56Right-handed alpha
Helix 5
AA5
A
58 70Right-handed alpha
Helix 6
AA6
A
72 90Right-handed alpha
Helix 7
AA7
A
91 94Right-handed 310
Helix 8
AA8
A
95 115Right-handed alpha
Helix 9
AA9
A
123 146Right-handed alpha
Helix 10
AB1
A
148 160Right-handed alpha
Helix 11
AB2
A
160 180Right-handed alpha
Helix 12
AB3
A
187 215Right-handed alpha
Helix 13
AB4
A
218 233Right-handed alpha
Helix 14
AB5
A
237 243Right-handed alpha
Helix 15
AB6
A
245 255Right-handed alpha
Helix 16
AB7
A
257 274Right-handed alpha
Helix 17
AB8
A
279 298Right-handed alpha
Helix 18
AB9
A
303 311Right-handed alpha
Helix 19
AC1
A
312 340Right-handed alpha
Helix 20
AC2
A
343 359Right-handed alpha
Helix 21
AC3
A
362 384Right-handed alpha
Helix 22
AC4
A
403 423Right-handed alpha
Helix 23
AC5
A
448 485Right-handed alpha
Helix 24
AC6
A
490 504Right-handed alpha
Helix 25
AC7
A
509 531Right-handed alpha
Helix 26
AC8
A
533 550Right-handed alpha
Helix 27
AC9
A
551 556Right-handed alpha
Helix 28
AD1
A
558 573Right-handed alpha
Helix 29
AD2
A
579 600Right-handed alpha
Helix 30
AD3
A
609 622Right-handed alpha
Helix 31
AD4
A
626 643Right-handed alpha
Helix 32
AD5
A
646 675Right-handed alpha
Helix 33
AD6
A
676 680Right-handed 310
Helix 34
AD7
A
681 703Right-handed alpha
Helix 35
AD8
A
706 712Right-handed alpha
Helix 36
AD9
A
713 736Right-handed alpha
Helix 37
AE1
A
737 741Right-handed 310
Helix 38
AE2
A
742 766Right-handed alpha
Helix 39
AE3
A
768 776Right-handed alpha
Helix 40
AE4
A
776 784Right-handed alpha
Helix 41
AE5
A
784 791Right-handed alpha
Helix 42
AE6
A
792 797Right-handed 310
Helix 43
AE7
A
798 812Right-handed alpha
Helix 44
AE8
A
813 817Right-handed 310
Helix 45
AE9
A
818 835Right-handed alpha
Helix 46
AF1
A
841 859Right-handed alpha
Helix 47
AF2
A
859 866Right-handed alpha
Helix 48
AF3
A
867 883Right-handed alpha
Helix 49
AF4
A
886 905Right-handed alpha
Helix 50
AF5
A
907 931Right-handed alpha
Helix 51
AF6
A
932 937Right-handed 310
Helix 52
AF7
A
938 956Right-handed alpha
Helix 53
AF8
A
969 986Right-handed alpha
Helix 54
AF9
A
990 1004Right-handed alpha
Helix 55
AG1
A
1007 1022Right-handed alpha
Helix 56
AG2
A
1034 1051Right-handed alpha
Helix 57
AG3
B
24 35Right-handed alpha
Helix 58
AG4
B
77 83Right-handed 310
Helix 59
AG5
B
96 102Right-handed alpha
Helix 60
AG6
B
102 112Right-handed alpha
Helix 61
AG7
B
139 144Right-handed alpha
Helix 62
AG8
B
160 172Right-handed alpha
Helix 63
AG9
C
55 64Right-handed alpha
Helix 64
AH1
C
65 73Right-handed alpha
Helix 65
AH2
C
74 79Right-handed 310
Helix 66
AH3
C
88 97Right-handed alpha
Helix 67
AH4
C
97 107Right-handed alpha
Helix 68
AH5
C
120 128Right-handed alpha
Helix 69
AH6
C
130 140Right-handed alpha
Helix 70
AH7
C
153 161Right-handed alpha
Helix 71
AH8
C
163 173Right-handed alpha
Helix 72
AH9
C
186 197Right-handed alpha
Helix 73
AI1
C
201 216Right-handed alpha
Helix 74
AI2
C
221 225Right-handed 310
Helix 75
AI3
C
227 232Right-handed alpha
Helix 76
AI4
C
233 246Right-handed alpha
Helix 77
AI5
C
249 263Right-handed alpha
Helix 78
AI6
C
266 272Right-handed alpha
Helix 79
AI7
C
277 285Right-handed alpha
Helix 80
AI8
E
32 37Right-handed alpha
Helix 81
AI9
E
39 46Right-handed alpha
Helix 82
AJ1
E
66 84Right-handed alpha
Helix 83
AJ2
E
96 98Right-handed 310
Helix 84
AJ3
E
99 111Right-handed alpha
Helix 85
AJ4
F
23 35Right-handed alpha
Helix 86
AJ5
F
100 104Right-handed 310
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There are 3 sheets in PDB entry 9OGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 435first strand
Strand 2
A
439 444anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 56first strand
Strand 2
B
59 68anti-parallel
Strand 3
B
13 18parallel
Strand 4
B
87 93parallel
Strand 5
B
119 124parallel
Strand 6
B
147 150parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 61first strand
Strand 2
E
19 22parallel
Strand 3
E
28 31anti-parallel
Strand 4
F
12 19parallel
Strand 5
F
2 9anti-parallel
Strand 6
F
73 78parallel
Strand 7
F
43 46anti-parallel
Strand 8
F
49 51anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il