Analysis of interatomic Contacts of Structural Units in PDB entry:
9OGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OGC entry

There are 4 chains in PDB entry 9OGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 218ASP 1071
B
 THR 53GLU 288
E
 TYR 18CYS 112
F
 MET 1GLN 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 67 helices in PDB entry 9OGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
218 233Right-handed alpha
Helix 2
AA2
A
264 272Right-handed alpha
Helix 3
AA3
A
273 275Right-handed 310
Helix 4
AA4
A
279 298Right-handed alpha
Helix 5
AA5
A
303 311Right-handed alpha
Helix 6
AA6
A
312 340Right-handed alpha
Helix 7
AA7
A
343 358Right-handed alpha
Helix 8
AA8
A
362 382Right-handed alpha
Helix 9
AA9
A
405 408Right-handed 310
Helix 10
AB1
A
409 423Right-handed alpha
Helix 11
AB2
A
449 468Right-handed alpha
Helix 12
AB3
A
468 486Right-handed alpha
Helix 13
AB4
A
490 503Right-handed alpha
Helix 14
AB5
A
509 531Right-handed alpha
Helix 15
AB6
A
533 550Right-handed alpha
Helix 16
AB7
A
551 558Right-handed alpha
Helix 17
AB8
A
558 573Right-handed alpha
Helix 18
AB9
A
577 595Right-handed alpha
Helix 19
AC1
A
595 601Right-handed alpha
Helix 20
AC2
A
609 617Right-handed alpha
Helix 21
AC3
A
617 623Right-handed alpha
Helix 22
AC4
A
626 642Right-handed alpha
Helix 23
AC5
A
646 658Right-handed alpha
Helix 24
AC6
A
658 675Right-handed alpha
Helix 25
AC7
A
676 680Right-handed 310
Helix 26
AC8
A
681 703Right-handed alpha
Helix 27
AC9
A
706 736Right-handed alpha
Helix 28
AD1
A
737 741Right-handed 310
Helix 29
AD2
A
742 766Right-handed alpha
Helix 30
AD3
A
768 775Right-handed alpha
Helix 31
AD4
A
776 791Right-handed alpha
Helix 32
AD5
A
792 796Right-handed 310
Helix 33
AD6
A
797 811Right-handed alpha
Helix 34
AD7
A
813 817Right-handed 310
Helix 35
AD8
A
818 826Right-handed alpha
Helix 36
AD9
A
826 836Right-handed alpha
Helix 37
AE1
A
841 859Right-handed alpha
Helix 38
AE2
A
859 866Right-handed alpha
Helix 39
AE3
A
867 882Right-handed alpha
Helix 40
AE4
A
886 905Right-handed alpha
Helix 41
AE5
A
907 933Right-handed alpha
Helix 42
AE6
A
938 955Right-handed alpha
Helix 43
AE7
A
969 986Right-handed alpha
Helix 44
AE8
A
990 1004Right-handed alpha
Helix 45
AE9
A
1007 1027Right-handed alpha
Helix 46
AF1
A
1030 1056Right-handed alpha
Helix 47
AF2
B
55 63Right-handed alpha
Helix 48
AF3
B
65 75Right-handed alpha
Helix 49
AF4
B
88 97Right-handed alpha
Helix 50
AF5
B
97 106Right-handed alpha
Helix 51
AF6
B
120 129Right-handed alpha
Helix 52
AF7
B
130 140Right-handed alpha
Helix 53
AF8
B
153 162Right-handed alpha
Helix 54
AF9
B
164 173Right-handed alpha
Helix 55
AG1
B
186 197Right-handed alpha
Helix 56
AG2
B
201 216Right-handed alpha
Helix 57
AG3
B
227 232Right-handed alpha
Helix 58
AG4
B
233 246Right-handed alpha
Helix 59
AG5
B
249 263Right-handed alpha
Helix 60
AG6
B
266 273Right-handed alpha
Helix 61
AG7
B
277 285Right-handed alpha
Helix 62
AG8
E
32 37Right-handed alpha
Helix 63
AG9
E
39 46Right-handed alpha
Helix 64
AH1
E
66 84Right-handed alpha
Helix 65
AH2
E
96 110Right-handed alpha
Helix 66
AH3
F
23 36Right-handed alpha
Helix 67
AH4
F
38 40Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 9OGC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 61first strand
Strand 2
E
19 22parallel
Strand 3
E
28 31anti-parallel
Strand 4
F
12 19parallel
Strand 5
F
2 9anti-parallel
Strand 6
F
73 81parallel
Strand 7
F
42 46anti-parallel
Strand 8
F
49 50anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 61first strand
Strand 2
E
19 22parallel
Strand 3
E
28 31anti-parallel
Strand 4
F
12 19parallel
Strand 5
F
2 9anti-parallel
Strand 6
F
73 81parallel
Strand 7
F
84 85anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il