Analysis of interatomic Contacts of Structural Units in PDB entry:
9OGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OGD entry

There are 4 chains in PDB entry 9OGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 219ASP 1071
B
 THR 53GLU 288
E
 MET 17CYS 112
F
 MET 1GLN 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 9OGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
219 233Right-handed alpha
Helix 2
AA2
A
237 243Right-handed alpha
Helix 3
AA3
A
245 254Right-handed alpha
Helix 4
AA4
A
257 273Right-handed alpha
Helix 5
AA5
A
279 298Right-handed alpha
Helix 6
AA6
A
303 311Right-handed alpha
Helix 7
AA7
A
312 339Right-handed alpha
Helix 8
AA8
A
343 358Right-handed alpha
Helix 9
AA9
A
362 384Right-handed alpha
Helix 10
AB1
A
405 423Right-handed alpha
Helix 11
AB2
A
449 468Right-handed alpha
Helix 12
AB3
A
468 485Right-handed alpha
Helix 13
AB4
A
490 504Right-handed alpha
Helix 14
AB5
A
509 531Right-handed alpha
Helix 15
AB6
A
533 550Right-handed alpha
Helix 16
AB7
A
551 558Right-handed alpha
Helix 17
AB8
A
558 573Right-handed alpha
Helix 18
AB9
A
579 595Right-handed alpha
Helix 19
AC1
A
596 599Right-handed 310
Helix 20
AC2
A
609 617Right-handed alpha
Helix 21
AC3
A
617 622Right-handed alpha
Helix 22
AC4
A
626 643Right-handed alpha
Helix 23
AC5
A
646 658Right-handed alpha
Helix 24
AC6
A
658 675Right-handed alpha
Helix 25
AC7
A
676 680Right-handed 310
Helix 26
AC8
A
681 703Right-handed alpha
Helix 27
AC9
A
706 736Right-handed alpha
Helix 28
AD1
A
737 741Right-handed 310
Helix 29
AD2
A
742 765Right-handed alpha
Helix 30
AD3
A
768 776Right-handed alpha
Helix 31
AD4
A
776 791Right-handed alpha
Helix 32
AD5
A
798 812Right-handed alpha
Helix 33
AD6
A
813 816Right-handed 310
Helix 34
AD7
A
818 836Right-handed alpha
Helix 35
AD8
A
841 859Right-handed alpha
Helix 36
AD9
A
860 866Right-handed alpha
Helix 37
AE1
A
867 883Right-handed alpha
Helix 38
AE2
A
886 905Right-handed alpha
Helix 39
AE3
A
907 933Right-handed alpha
Helix 40
AE4
A
935 937Right-handed 310
Helix 41
AE5
A
938 955Right-handed alpha
Helix 42
AE6
A
969 986Right-handed alpha
Helix 43
AE7
A
990 1004Right-handed alpha
Helix 44
AE8
A
1007 1026Right-handed alpha
Helix 45
AE9
A
1031 1033Right-handed 310
Helix 46
AF1
A
1034 1055Right-handed alpha
Helix 47
AF2
B
55 64Right-handed alpha
Helix 48
AF3
B
65 74Right-handed alpha
Helix 49
AF4
B
88 97Right-handed alpha
Helix 50
AF5
B
97 107Right-handed alpha
Helix 51
AF6
B
120 129Right-handed alpha
Helix 52
AF7
B
130 140Right-handed alpha
Helix 53
AF8
B
153 161Right-handed alpha
Helix 54
AF9
B
163 173Right-handed alpha
Helix 55
AG1
B
186 197Right-handed alpha
Helix 56
AG2
B
201 216Right-handed alpha
Helix 57
AG3
B
227 232Right-handed alpha
Helix 58
AG4
B
233 246Right-handed alpha
Helix 59
AG5
B
249 262Right-handed alpha
Helix 60
AG6
B
266 271Right-handed alpha
Helix 61
AG7
B
272 274Right-handed 310
Helix 62
AG8
B
277 285Right-handed alpha
Helix 63
AG9
E
33 37Right-handed alpha
Helix 64
AH1
E
39 46Right-handed alpha
Helix 65
AH2
E
66 83Right-handed alpha
Helix 66
AH3
E
96 110Right-handed alpha
Helix 67
AH4
F
23 36Right-handed alpha
Helix 68
AH5
F
38 40Right-handed 310
Helix 69
AH6
F
100 104Right-handed 310
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There are 2 sheets in PDB entry 9OGD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 61first strand
Strand 2
E
18 22parallel
Strand 3
E
28 32anti-parallel
Strand 4
F
12 19parallel
Strand 5
F
2 9anti-parallel
Strand 6
F
73 81parallel
Strand 7
F
42 45anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 61first strand
Strand 2
E
18 22parallel
Strand 3
E
28 32anti-parallel
Strand 4
F
12 19parallel
Strand 5
F
2 9anti-parallel
Strand 6
F
73 81parallel
Strand 7
F
84 85anti-parallel
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