Analysis of interatomic Contacts of Structural Units in PDB entry:
9OH5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OH5 entry

There are 2 chains in PDB entry 9OH5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1LYS 258
B
 TYR 1LYS 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9OH5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 24Right-handed 310
Helix 2
AA2
A
40 55Right-handed alpha
Helix 3
AA3
A
59 67Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
169 184Right-handed alpha
Helix 6
AA6
A
188 196Right-handed alpha
Helix 7
AA7
A
226 230Right-handed 310
Helix 8
AA8
B
40 55Right-handed alpha
Helix 9
AA9
B
59 67Right-handed alpha
Helix 10
AB1
B
226 230Right-handed 310
Helix 11
AB2
B
238 242Right-handed 310
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There are 4 sheets in PDB entry 9OH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
90 96anti-parallel
Strand 3
A
102 106anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
A
127 144anti-parallel
Strand 6
A
147 165anti-parallel
Strand 7
A
26 36anti-parallel
Strand 8
A
2 8anti-parallel
Strand 9
A
244 248anti-parallel
Strand 10
A
231 234anti-parallel
Strand 11
A
219 225anti-parallel
Strand 12
A
208 211anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
90 96anti-parallel
Strand 3
A
102 106anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
A
127 144anti-parallel
Strand 6
A
147 165anti-parallel
Strand 7
A
26 36anti-parallel
Strand 8
A
256 257anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 32first strand
Strand 2
B
2 15anti-parallel
Strand 3
B
244 248anti-parallel
Strand 4
B
231 235anti-parallel
Strand 5
B
219 225anti-parallel
Strand 6
B
208 211anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
256 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il