Analysis of interatomic Contacts of Structural Units in PDB entry:
9OIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OIB entry

There is 1 chain in PDB entry 9OIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24ASN 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9OIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 125Right-handed 310
Helix 2
AA2
A
141 146Right-handed 310
Helix 3
AA3
A
428 430Right-handed 310
Helix 4
AA4
A
431 441Right-handed alpha
Helix 5
AA5
A
442 445Right-handed 310
Helix 6
AA6
A
456 460Right-handed 310
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There are 5 sheets in PDB entry 9OIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
57 61parallel
Strand 4
A
81 85parallel
Strand 5
A
105 107parallel
Strand 6
A
129 131parallel
Strand 7
A
153 155parallel
Strand 8
A
177 179parallel
Strand 9
A
201 203parallel
Strand 10
A
225 227parallel
Strand 11
A
249 251parallel
Strand 12
A
273 275parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
91 92parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
321 323parallel
Strand 3
A
345 347parallel
Strand 4
A
369 371parallel
Strand 5
A
393 395parallel
Strand 6
A
417 419parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
331 332parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
453 455parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il