Analysis of interatomic Contacts of Structural Units in PDB entry:
9OIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OIJ entry

There are 2 chains in PDB entry 9OIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 17PHE 207
B
 HIS 16GLY 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9OIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 33Right-handed 310
Helix 2
AA2
A
35 59Right-handed alpha
Helix 3
AA3
A
72 83Right-handed alpha
Helix 4
AA4
A
86 106Right-handed alpha
Helix 5
AA5
A
112 124Right-handed alpha
Helix 6
AA6
A
127 132Right-handed alpha
Helix 7
AA7
A
138 149Right-handed alpha
Helix 8
AA8
A
150 153Right-handed 310
Helix 9
AA9
A
167 195Right-handed alpha
Helix 10
AB1
B
23 26Right-handed 310
Helix 11
AB2
B
27 32Right-handed alpha
Helix 12
AB3
B
35 59Right-handed alpha
Helix 13
AB4
B
72 83Right-handed alpha
Helix 14
AB5
B
86 106Right-handed alpha
Helix 15
AB6
B
112 124Right-handed alpha
Helix 16
AB7
B
127 132Right-handed alpha
Helix 17
AB8
B
138 149Right-handed alpha
Helix 18
AB9
B
150 152Right-handed 310
Helix 19
AC1
B
153 158Right-handed alpha
Helix 20
AC2
B
164 196Right-handed alpha
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There are no sheets in PDB entry 9OIJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il