Analysis of interatomic Contacts of Structural Units in PDB entry:
9OIK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OIK entry

There are 4 chains in PDB entry 9OIK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 219
B
 SER 9PHE 207
C
 ILE 902ARG 932
D
 ILE 902LEU 933
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9OIK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 28Right-handed alpha
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
35 59Right-handed alpha
Helix 4
AA4
A
72 83Right-handed alpha
Helix 5
AA5
A
86 106Right-handed alpha
Helix 6
AA6
A
112 125Right-handed alpha
Helix 7
AA7
A
127 132Right-handed alpha
Helix 8
AA8
A
138 149Right-handed alpha
Helix 9
AA9
A
150 157Right-handed 310
Helix 10
AB1
A
164 195Right-handed alpha
Helix 11
AB2
A
210 217Right-handed alpha
Helix 12
AB3
B
23 28Right-handed alpha
Helix 13
AB4
B
29 33Right-handed 310
Helix 14
AB5
B
35 59Right-handed alpha
Helix 15
AB6
B
72 83Right-handed alpha
Helix 16
AB7
B
86 106Right-handed alpha
Helix 17
AB8
B
112 124Right-handed alpha
Helix 18
AB9
B
127 132Right-handed alpha
Helix 19
AC1
B
138 149Right-handed alpha
Helix 20
AC2
B
150 158Right-handed 310
Helix 21
AC3
B
164 195Right-handed alpha
Helix 22
AC4
C
928 930Right-handed 310
Helix 23
AC5
D
928 930Right-handed 310
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There are 3 sheets in PDB entry 9OIK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 206first strand
Strand 2
A
10 14anti-parallel
Strand 3
C
922 926anti-parallel
Strand 4
C
916 919anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 206first strand
Strand 2
B
10 14anti-parallel
Strand 3
D
922 926anti-parallel
Strand 4
D
916 919anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
904 905first strand
Strand 2
D
912 913anti-parallel
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