Analysis of interatomic Contacts of Structural Units in PDB entry:
9OJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OJI entry

There is 1 chain in PDB entry 9OJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 178ASP 1283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9OJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 236Right-handed alpha
Helix 2
AA2
A
241 245Right-handed 310
Helix 3
AA3
A
282 284Right-handed 310
Helix 4
AA4
A
288 302Right-handed alpha
Helix 5
AA5
A
315 338Right-handed alpha
Helix 6
AA6
A
340 353Right-handed alpha
Helix 7
AA7
A
354 362Right-handed 310
Helix 8
AA8
A
383 387Right-handed 310
Helix 9
AA9
A
430 451Right-handed alpha
Helix 10
AB1
A
454 458Right-handed 310
Helix 11
AB2
A
466 471Right-handed 310
Helix 12
AB3
A
472 486Right-handed alpha
Helix 13
AB4
A
491 497Right-handed alpha
Helix 14
AB5
A
508 517Right-handed alpha
Helix 15
AB6
A
524 535Right-handed alpha
Helix 16
AB7
A
554 559Right-handed alpha
Helix 17
AB8
A
587 599Right-handed alpha
Helix 18
AB9
A
610 626Right-handed alpha
Helix 19
AC1
A
635 646Right-handed alpha
Helix 20
AC2
A
655 659Right-handed alpha
Helix 21
AC3
A
672 684Right-handed alpha
Helix 22
AC4
A
701 705Right-handed 310
Helix 23
AC5
A
730 735Right-handed alpha
Helix 24
AC6
A
789 793Right-handed 310
Helix 25
AC7
A
853 858Right-handed alpha
Helix 26
AC8
A
878 886Right-handed alpha
Helix 27
AC9
A
886 894Right-handed alpha
Helix 28
AD1
A
912 917Right-handed alpha
Helix 29
AD2
A
939 953Right-handed alpha
Helix 30
AD3
A
1007 1013Right-handed alpha
Helix 31
AD4
A
1016 1024Right-handed alpha
Helix 32
AD5
A
1024 1029Right-handed alpha
Helix 33
AD6
A
1049 1053Right-handed 310
Helix 34
AD7
A
1079 1083Right-handed 310
Helix 35
AD8
A
1086 1090Right-handed 310
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There are 16 sheets in PDB entry 9OJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
202 205anti-parallel
Strand 3
A
194 197anti-parallel
Strand 4
A
1160 1163parallel
Strand 5
A
1169 1172anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
1095 1100anti-parallel
Strand 3
A
1105 1108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
279 280anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
270 272anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
995 998first strand
Strand 2
A
974 980anti-parallel
Strand 3
A
377 381anti-parallel
Strand 4
A
1055 1057anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
965 966anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 464first strand
Strand 2
A
956 961parallel
Strand 3
A
897 899parallel
Strand 4
A
860 863parallel
Strand 5
A
650 654parallel
Strand 6
A
577 578parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
691 695first strand
Strand 2
A
713 717anti-parallel
Strand 3
A
738 743anti-parallel
Strand 4
A
818 826anti-parallel
Strand 5
A
768 775anti-parallel
Strand 6
A
794 795anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 782first strand
Strand 2
A
768 775anti-parallel
Strand 3
A
818 826anti-parallel
Strand 4
A
812 813anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 759first strand
Strand 2
A
801 804anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1118 1121first strand
Strand 2
A
1127 1130anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1139 1141first strand
Strand 2
A
1148 1150anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1182 1186first strand
Strand 2
A
1191 1195anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1206 1207first strand
Strand 2
A
1212 1213anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1228first strand
Strand 2
A
1234 1237anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1248 1249first strand
Strand 2
A
1259 1260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il