Analysis of interatomic Contacts of Structural Units in PDB entry:
9OJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OJR entry

There are 7 chains in PDB entry 9OJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 215	PRO 740
B	ARG 205	PRO 740
C	GLN 206	PRO 740
D	GLN 206	PRO 740
E	SER 207	PRO 740
F	PHE 215	PRO 740
H	MET 1	ARG 16

There are164 helices in PDB entry 9OJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	223	235	Right-handed alpha
Helix 2	AA2	A	235	240	Right-handed alpha
Helix 3	AA3	A	241	249	Right-handed alpha
Helix 4	AA4	A	265	277	Right-handed alpha
Helix 5	AA5	A	288	290	Right-handed 310
Helix 6	AA6	A	296	304	Right-handed alpha
Helix 7	AA7	A	306	317	Right-handed alpha
Helix 8	AA8	A	330	333	Right-handed 310
Helix 9	AA9	A	347	359	Right-handed alpha
Helix 10	AB1	A	375	379	Right-handed 310
Helix 11	AB2	A	399	411	Right-handed alpha
Helix 12	AB3	A	411	417	Right-handed alpha
Helix 13	AB4	A	425	433	Right-handed alpha
Helix 14	AB5	A	437	463	Right-handed alpha
Helix 15	AB6	A	466	473	Right-handed alpha
Helix 16	AB7	A	477	487	Right-handed alpha
Helix 17	AB8	A	498	503	Right-handed alpha
Helix 18	AB9	A	512	531	Right-handed alpha
Helix 19	AC1	A	548	560	Right-handed alpha
Helix 20	AC2	A	569	573	Right-handed 310
Helix 21	AC3	A	577	593	Right-handed alpha
Helix 22	AC4	A	604	609	Right-handed alpha
Helix 23	AC5	A	619	630	Right-handed alpha
Helix 24	AC6	A	648	655	Right-handed alpha
Helix 25	AC7	A	657	661	Right-handed 310
Helix 26	AC8	A	672	684	Right-handed alpha
Helix 27	AC9	A	687	699	Right-handed alpha
Helix 28	AD1	A	706	718	Right-handed alpha
Helix 29	AD2	A	725	736	Right-handed alpha
Helix 30	AD3	B	214	218	Right-handed 310
Helix 31	AD4	B	223	235	Right-handed alpha
Helix 32	AD5	B	241	246	Right-handed alpha
Helix 33	AD6	B	265	277	Right-handed alpha
Helix 34	AD7	B	296	304	Right-handed alpha
Helix 35	AD8	B	306	317	Right-handed alpha
Helix 36	AD9	B	318	320	Right-handed 310
Helix 37	AE1	B	330	333	Right-handed 310
Helix 38	AE2	B	343	359	Right-handed alpha
Helix 39	AE3	B	375	379	Right-handed 310
Helix 40	AE4	B	399	410	Right-handed alpha
Helix 41	AE5	B	411	417	Right-handed alpha
Helix 42	AE6	B	425	433	Right-handed alpha
Helix 43	AE7	B	437	456	Right-handed alpha
Helix 44	AE8	B	466	470	Right-handed 310
Helix 45	AE9	B	476	487	Right-handed alpha
Helix 46	AF1	B	495	503	Right-handed alpha
Helix 47	AF2	B	511	531	Right-handed alpha
Helix 48	AF3	B	548	560	Right-handed alpha
Helix 49	AF4	B	569	573	Right-handed 310
Helix 50	AF5	B	577	593	Right-handed alpha
Helix 51	AF6	B	604	610	Right-handed alpha
Helix 52	AF7	B	619	630	Right-handed alpha
Helix 53	AF8	B	648	655	Right-handed alpha
Helix 54	AF9	B	672	684	Right-handed alpha
Helix 55	AG1	B	687	699	Right-handed alpha
Helix 56	AG2	B	706	718	Right-handed alpha
Helix 57	AG3	B	724	737	Right-handed alpha
Helix 58	AG4	C	223	235	Right-handed alpha
Helix 59	AG5	C	235	240	Right-handed alpha
Helix 60	AG6	C	241	249	Right-handed alpha
Helix 61	AG7	C	265	277	Right-handed alpha
Helix 62	AG8	C	296	304	Right-handed alpha
Helix 63	AG9	C	306	317	Right-handed alpha
Helix 64	AH1	C	318	320	Right-handed 310
Helix 65	AH2	C	330	333	Right-handed 310
Helix 66	AH3	C	348	359	Right-handed alpha
Helix 67	AH4	C	375	379	Right-handed 310
Helix 68	AH5	C	381	385	Right-handed 310
Helix 69	AH6	C	399	417	Right-handed alpha
Helix 70	AH7	C	425	433	Right-handed alpha
Helix 71	AH8	C	437	455	Right-handed alpha
Helix 72	AH9	C	469	473	Right-handed 310
Helix 73	AI1	C	476	487	Right-handed alpha
Helix 74	AI2	C	496	503	Right-handed alpha
Helix 75	AI3	C	511	531	Right-handed alpha
Helix 76	AI4	C	548	561	Right-handed alpha
Helix 77	AI5	C	569	573	Right-handed 310
Helix 78	AI6	C	577	593	Right-handed alpha
Helix 79	AI7	C	604	609	Right-handed alpha
Helix 80	AI8	C	619	630	Right-handed alpha
Helix 81	AI9	C	648	655	Right-handed alpha
Helix 82	AJ1	C	672	684	Right-handed alpha
Helix 83	AJ2	C	687	699	Right-handed alpha
Helix 84	AJ3	C	706	718	Right-handed alpha
Helix 85	AJ4	C	724	737	Right-handed alpha
Helix 86	AJ5	D	223	240	Right-handed alpha
Helix 87	AJ6	D	241	249	Right-handed alpha
Helix 88	AJ7	D	265	277	Right-handed alpha
Helix 89	AJ8	D	296	304	Right-handed alpha
Helix 90	AJ9	D	306	317	Right-handed alpha
Helix 91	AK1	D	330	333	Right-handed 310
Helix 92	AK2	D	343	359	Right-handed alpha
Helix 93	AK3	D	375	379	Right-handed 310
Helix 94	AK4	D	380	384	Right-handed 310
Helix 95	AK5	D	399	410	Right-handed alpha
Helix 96	AK6	D	411	417	Right-handed alpha
Helix 97	AK7	D	425	433	Right-handed alpha
Helix 98	AK8	D	437	454	Right-handed alpha
Helix 99	AK9	D	476	487	Right-handed alpha
Helix 100	AL1	D	495	503	Right-handed alpha
Helix 101	AL2	D	512	531	Right-handed alpha
Helix 102	AL3	D	548	561	Right-handed alpha
Helix 103	AL4	D	569	573	Right-handed 310
Helix 104	AL5	D	577	595	Right-handed alpha
Helix 105	AL6	D	604	609	Right-handed alpha
Helix 106	AL7	D	619	630	Right-handed alpha
Helix 107	AL8	D	648	655	Right-handed alpha
Helix 108	AL9	D	673	684	Right-handed alpha
Helix 109	AM1	D	687	699	Right-handed alpha
Helix 110	AM2	D	706	719	Right-handed alpha
Helix 111	AM3	D	724	737	Right-handed alpha
Helix 112	AM4	E	215	219	Right-handed 310
Helix 113	AM5	E	224	236	Right-handed alpha
Helix 114	AM6	E	241	249	Right-handed alpha
Helix 115	AM7	E	265	277	Right-handed alpha
Helix 116	AM8	E	296	317	Right-handed alpha
Helix 117	AM9	E	318	320	Right-handed 310
Helix 118	AN1	E	330	333	Right-handed 310
Helix 119	AN2	E	345	359	Right-handed alpha
Helix 120	AN3	E	375	379	Right-handed 310
Helix 121	AN4	E	380	384	Right-handed 310
Helix 122	AN5	E	399	417	Right-handed alpha
Helix 123	AN6	E	425	433	Right-handed alpha
Helix 124	AN7	E	437	454	Right-handed alpha
Helix 125	AN8	E	455	457	Right-handed 310
Helix 126	AN9	E	468	472	Right-handed 310
Helix 127	AO1	E	476	487	Right-handed alpha
Helix 128	AO2	E	498	503	Right-handed alpha
Helix 129	AO3	E	511	530	Right-handed alpha
Helix 130	AO4	E	548	560	Right-handed alpha
Helix 131	AO5	E	577	595	Right-handed alpha
Helix 132	AO6	E	604	609	Right-handed alpha
Helix 133	AO7	E	619	632	Right-handed alpha
Helix 134	AO8	E	648	655	Right-handed alpha
Helix 135	AO9	E	672	684	Right-handed alpha
Helix 136	AP1	E	687	699	Right-handed alpha
Helix 137	AP2	E	706	718	Right-handed alpha
Helix 138	AP3	E	724	737	Right-handed alpha
Helix 139	AP4	F	223	234	Right-handed alpha
Helix 140	AP5	F	235	240	Right-handed alpha
Helix 141	AP6	F	241	246	Right-handed alpha
Helix 142	AP7	F	265	277	Right-handed alpha
Helix 143	AP8	F	296	304	Right-handed alpha
Helix 144	AP9	F	306	317	Right-handed alpha
Helix 145	AQ1	F	329	333	Right-handed 310
Helix 146	AQ2	F	345	359	Right-handed alpha
Helix 147	AQ3	F	375	379	Right-handed 310
Helix 148	AQ4	F	380	385	Right-handed 310
Helix 149	AQ5	F	399	417	Right-handed alpha
Helix 150	AQ6	F	425	433	Right-handed alpha
Helix 151	AQ7	F	437	455	Right-handed alpha
Helix 152	AQ8	F	476	486	Right-handed alpha
Helix 153	AQ9	F	498	503	Right-handed 310
Helix 154	AR1	F	511	530	Right-handed alpha
Helix 155	AR2	F	549	561	Right-handed alpha
Helix 156	AR3	F	569	573	Right-handed 310
Helix 157	AR4	F	577	595	Right-handed alpha
Helix 158	AR5	F	604	609	Right-handed alpha
Helix 159	AR6	F	619	630	Right-handed alpha
Helix 160	AR7	F	648	655	Right-handed alpha
Helix 161	AR8	F	673	684	Right-handed alpha
Helix 162	AR9	F	687	699	Right-handed alpha
Helix 163	AS1	F	706	719	Right-handed alpha
Helix 164	AS2	F	724	737	Right-handed alpha

There are 16 sheets in PDB entry 9OJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	323	328	parallel
Strand 3	A	367	373	parallel
Strand 4	A	255	259	parallel
Strand 5	A	391	394	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	568	first strand
Strand 2	A	597	603	parallel
Strand 3	A	639	646	parallel
Strand 4	A	536	542	parallel
Strand 5	A	664	666	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	323	328	parallel
Strand 3	B	367	373	parallel
Strand 4	B	255	259	parallel
Strand 5	B	391	394	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	568	first strand
Strand 2	B	597	602	parallel
Strand 3	B	639	646	parallel
Strand 4	B	536	542	parallel
Strand 5	B	664	666	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	286	first strand
Strand 2	C	323	328	parallel
Strand 3	C	367	373	parallel
Strand 4	C	255	259	parallel
Strand 5	C	391	394	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	458	first strand
Strand 2	C	464	465	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	568	first strand
Strand 2	C	597	602	parallel
Strand 3	C	639	646	parallel
Strand 4	C	536	542	parallel
Strand 5	C	663	666	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	286	first strand
Strand 2	D	323	328	parallel
Strand 3	D	367	373	parallel
Strand 4	D	256	259	parallel
Strand 5	D	391	394	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	459	first strand
Strand 2	D	463	465	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	568	first strand
Strand 2	D	597	602	parallel
Strand 3	D	639	646	parallel
Strand 4	D	536	542	parallel
Strand 5	D	664	666	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	670	672	first strand
Strand 2	D	702	705	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	323	328	parallel
Strand 3	E	367	373	parallel
Strand 4	E	255	259	parallel
Strand 5	E	391	394	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	568	first strand
Strand 2	E	597	602	parallel
Strand 3	E	639	646	parallel
Strand 4	E	536	542	parallel
Strand 5	E	663	666	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	286	first strand
Strand 2	F	323	328	parallel
Strand 3	F	367	373	parallel
Strand 4	F	256	259	parallel
Strand 5	F	391	394	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	568	first strand
Strand 2	F	597	602	parallel
Strand 3	F	639	645	parallel
Strand 4	F	536	542	parallel
Strand 5	F	663	666	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	670	672	first strand
Strand 2	F	702	705	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OJR