Analysis of interatomic Contacts of Structural Units in PDB entry:
9OK5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OK5 entry

There are 7 chains in PDB entry 9OK5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 207	PRO 740
B	SER 207	PRO 740
C	GLN 206	PRO 740
D	ARG 205	PRO 740
E	GLN 206	PRO 740
F	ILE 209	PRO 740
G	UNK 4	UNK 17

There are159 helices in PDB entry 9OK5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	224	234	Right-handed alpha
Helix 2	AA2	A	241	249	Right-handed alpha
Helix 3	AA3	A	266	277	Right-handed alpha
Helix 4	AA4	A	297	305	Right-handed alpha
Helix 5	AA5	A	306	317	Right-handed alpha
Helix 6	AA6	A	329	333	Right-handed 310
Helix 7	AA7	A	348	359	Right-handed alpha
Helix 8	AA8	A	380	384	Right-handed 310
Helix 9	AA9	A	399	411	Right-handed alpha
Helix 10	AB1	A	411	417	Right-handed alpha
Helix 11	AB2	A	426	433	Right-handed alpha
Helix 12	AB3	A	437	463	Right-handed alpha
Helix 13	AB4	A	466	472	Right-handed alpha
Helix 14	AB5	A	477	487	Right-handed alpha
Helix 15	AB6	A	495	500	Right-handed alpha
Helix 16	AB7	A	512	530	Right-handed alpha
Helix 17	AB8	A	548	560	Right-handed alpha
Helix 18	AB9	A	569	573	Right-handed 310
Helix 19	AC1	A	577	593	Right-handed alpha
Helix 20	AC2	A	604	610	Right-handed alpha
Helix 21	AC3	A	619	630	Right-handed alpha
Helix 22	AC4	A	648	655	Right-handed alpha
Helix 23	AC5	A	672	684	Right-handed alpha
Helix 24	AC6	A	687	699	Right-handed alpha
Helix 25	AC7	A	706	718	Right-handed alpha
Helix 26	AC8	A	724	736	Right-handed alpha
Helix 27	AC9	B	214	219	Right-handed alpha
Helix 28	AD1	B	224	236	Right-handed alpha
Helix 29	AD2	B	237	239	Right-handed 310
Helix 30	AD3	B	241	249	Right-handed alpha
Helix 31	AD4	B	265	277	Right-handed alpha
Helix 32	AD5	B	297	304	Right-handed alpha
Helix 33	AD6	B	306	316	Right-handed alpha
Helix 34	AD7	B	344	347	Right-handed 310
Helix 35	AD8	B	348	359	Right-handed alpha
Helix 36	AD9	B	380	384	Right-handed 310
Helix 37	AE1	B	399	417	Right-handed alpha
Helix 38	AE2	B	425	433	Right-handed alpha
Helix 39	AE3	B	437	456	Right-handed alpha
Helix 40	AE4	B	466	472	Right-handed alpha
Helix 41	AE5	B	476	484	Right-handed alpha
Helix 42	AE6	B	498	503	Right-handed alpha
Helix 43	AE7	B	511	531	Right-handed alpha
Helix 44	AE8	B	548	559	Right-handed alpha
Helix 45	AE9	B	569	573	Right-handed 310
Helix 46	AF1	B	577	593	Right-handed alpha
Helix 47	AF2	B	604	609	Right-handed alpha
Helix 48	AF3	B	619	630	Right-handed alpha
Helix 49	AF4	B	648	655	Right-handed alpha
Helix 50	AF5	B	672	684	Right-handed alpha
Helix 51	AF6	B	687	699	Right-handed alpha
Helix 52	AF7	B	706	718	Right-handed alpha
Helix 53	AF8	B	724	736	Right-handed alpha
Helix 54	AF9	C	214	219	Right-handed alpha
Helix 55	AG1	C	223	235	Right-handed alpha
Helix 56	AG2	C	241	249	Right-handed alpha
Helix 57	AG3	C	266	277	Right-handed alpha
Helix 58	AG4	C	297	304	Right-handed alpha
Helix 59	AG5	C	306	317	Right-handed alpha
Helix 60	AG6	C	330	333	Right-handed 310
Helix 61	AG7	C	345	359	Right-handed alpha
Helix 62	AG8	C	380	384	Right-handed 310
Helix 63	AG9	C	399	411	Right-handed alpha
Helix 64	AH1	C	412	417	Right-handed alpha
Helix 65	AH2	C	425	433	Right-handed alpha
Helix 66	AH3	C	437	457	Right-handed alpha
Helix 67	AH4	C	468	472	Right-handed 310
Helix 68	AH5	C	476	487	Right-handed alpha
Helix 69	AH6	C	497	503	Right-handed alpha
Helix 70	AH7	C	512	530	Right-handed alpha
Helix 71	AH8	C	549	559	Right-handed alpha
Helix 72	AH9	C	569	573	Right-handed 310
Helix 73	AI1	C	577	593	Right-handed alpha
Helix 74	AI2	C	604	609	Right-handed alpha
Helix 75	AI3	C	619	630	Right-handed alpha
Helix 76	AI4	C	648	655	Right-handed alpha
Helix 77	AI5	C	672	684	Right-handed alpha
Helix 78	AI6	C	688	699	Right-handed alpha
Helix 79	AI7	C	706	717	Right-handed alpha
Helix 80	AI8	C	724	737	Right-handed alpha
Helix 81	AI9	D	214	219	Right-handed alpha
Helix 82	AJ1	D	223	235	Right-handed alpha
Helix 83	AJ2	D	241	246	Right-handed alpha
Helix 84	AJ3	D	266	277	Right-handed alpha
Helix 85	AJ4	D	296	303	Right-handed alpha
Helix 86	AJ5	D	306	316	Right-handed alpha
Helix 87	AJ6	D	330	333	Right-handed 310
Helix 88	AJ7	D	345	359	Right-handed alpha
Helix 89	AJ8	D	380	384	Right-handed 310
Helix 90	AJ9	D	399	411	Right-handed alpha
Helix 91	AK1	D	414	418	Right-handed 310
Helix 92	AK2	D	425	433	Right-handed alpha
Helix 93	AK3	D	437	455	Right-handed alpha
Helix 94	AK4	D	468	473	Right-handed 310
Helix 95	AK5	D	476	487	Right-handed alpha
Helix 96	AK6	D	495	503	Right-handed alpha
Helix 97	AK7	D	511	531	Right-handed alpha
Helix 98	AK8	D	548	559	Right-handed alpha
Helix 99	AK9	D	569	573	Right-handed 310
Helix 100	AL1	D	577	593	Right-handed alpha
Helix 101	AL2	D	604	609	Right-handed alpha
Helix 102	AL3	D	619	630	Right-handed alpha
Helix 103	AL4	D	648	655	Right-handed alpha
Helix 104	AL5	D	672	684	Right-handed alpha
Helix 105	AL6	D	687	697	Right-handed alpha
Helix 106	AL7	D	707	718	Right-handed alpha
Helix 107	AL8	D	724	736	Right-handed alpha
Helix 108	AL9	E	224	234	Right-handed alpha
Helix 109	AM1	E	241	249	Right-handed alpha
Helix 110	AM2	E	265	274	Right-handed alpha
Helix 111	AM3	E	296	304	Right-handed alpha
Helix 112	AM4	E	306	316	Right-handed alpha
Helix 113	AM5	E	329	333	Right-handed 310
Helix 114	AM6	E	345	359	Right-handed alpha
Helix 115	AM7	E	375	379	Right-handed 310
Helix 116	AM8	E	380	385	Right-handed 310
Helix 117	AM9	E	399	410	Right-handed alpha
Helix 118	AN1	E	411	417	Right-handed alpha
Helix 119	AN2	E	425	433	Right-handed alpha
Helix 120	AN3	E	437	456	Right-handed alpha
Helix 121	AN4	E	476	487	Right-handed alpha
Helix 122	AN5	E	495	503	Right-handed alpha
Helix 123	AN6	E	511	530	Right-handed alpha
Helix 124	AN7	E	549	560	Right-handed alpha
Helix 125	AN8	E	569	573	Right-handed 310
Helix 126	AN9	E	577	593	Right-handed alpha
Helix 127	AO1	E	604	608	Right-handed 310
Helix 128	AO2	E	619	630	Right-handed alpha
Helix 129	AO3	E	648	655	Right-handed alpha
Helix 130	AO4	E	672	684	Right-handed alpha
Helix 131	AO5	E	688	699	Right-handed alpha
Helix 132	AO6	E	706	718	Right-handed alpha
Helix 133	AO7	E	724	738	Right-handed alpha
Helix 134	AO8	F	214	219	Right-handed alpha
Helix 135	AO9	F	225	239	Right-handed alpha
Helix 136	AP1	F	241	249	Right-handed alpha
Helix 137	AP2	F	265	277	Right-handed alpha
Helix 138	AP3	F	287	291	Right-handed 310
Helix 139	AP4	F	296	317	Right-handed alpha
Helix 140	AP5	F	329	334	Right-handed alpha
Helix 141	AP6	F	345	360	Right-handed alpha
Helix 142	AP7	F	381	385	Right-handed 310
Helix 143	AP8	F	399	416	Right-handed alpha
Helix 144	AP9	F	425	433	Right-handed alpha
Helix 145	AQ1	F	437	459	Right-handed alpha
Helix 146	AQ2	F	468	472	Right-handed alpha
Helix 147	AQ3	F	476	487	Right-handed alpha
Helix 148	AQ4	F	494	503	Right-handed alpha
Helix 149	AQ5	F	512	530	Right-handed alpha
Helix 150	AQ6	F	549	560	Right-handed alpha
Helix 151	AQ7	F	569	573	Right-handed 310
Helix 152	AQ8	F	577	593	Right-handed alpha
Helix 153	AQ9	F	604	609	Right-handed alpha
Helix 154	AR1	F	619	630	Right-handed alpha
Helix 155	AR2	F	648	655	Right-handed alpha
Helix 156	AR3	F	672	684	Right-handed alpha
Helix 157	AR4	F	687	699	Right-handed alpha
Helix 158	AR5	F	706	719	Right-handed alpha
Helix 159	AR6	F	725	736	Right-handed alpha

There are 14 sheets in PDB entry 9OK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	323	326	parallel
Strand 3	A	367	373	parallel
Strand 4	A	255	259	parallel
Strand 5	A	392	394	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	539	first strand
Strand 2	A	640	643	parallel
Strand 3	A	598	602	parallel
Strand 4	A	564	568	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	665	666	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	323	328	parallel
Strand 3	B	367	373	parallel
Strand 4	B	256	259	parallel
Strand 5	B	391	394	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	568	first strand
Strand 2	B	599	602	parallel
Strand 3	B	640	646	parallel
Strand 4	B	536	542	parallel
Strand 5	B	664	666	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	323	328	parallel
Strand 3	C	367	372	parallel
Strand 4	C	256	259	parallel
Strand 5	C	391	394	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	568	first strand
Strand 2	C	598	602	parallel
Strand 3	C	640	646	parallel
Strand 4	C	536	542	parallel
Strand 5	C	665	666	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	323	328	parallel
Strand 3	D	367	373	parallel
Strand 4	D	256	259	parallel
Strand 5	D	391	392	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	458	first strand
Strand 2	D	464	465	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	568	first strand
Strand 2	D	597	602	parallel
Strand 3	D	639	645	parallel
Strand 4	D	536	542	parallel
Strand 5	D	665	666	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	323	328	parallel
Strand 3	E	367	373	parallel
Strand 4	E	256	259	parallel
Strand 5	E	391	394	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	566	568	first strand
Strand 2	E	600	602	parallel
Strand 3	E	640	646	parallel
Strand 4	E	536	542	parallel
Strand 5	E	663	666	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	285	first strand
Strand 2	F	325	328	parallel
Strand 3	F	370	373	parallel
Strand 4	F	256	259	parallel
Strand 5	F	391	394	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	568	first strand
Strand 2	F	597	603	parallel
Strand 3	F	639	646	parallel
Strand 4	F	536	542	parallel
Strand 5	F	665	666	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OK5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OK5