Analysis of interatomic Contacts of Structural Units in PDB entry:
9OKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OKA entry

There are 5 chains in PDB entry 9OKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ASN 1GLY 104
C
 ASN 1GLY 104
D
 ASN 1GLY 104
B
 ASN 1GLY 104
A
 ASN 1GLY 104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 9OKA

There are 10 sheets in PDB entry 9OKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 4first strand
Strand 2
D
3 4parallel
Strand 3
C
3 4parallel
Strand 4
B
3 4parallel
Strand 5
A
3 4parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 10first strand
Strand 2
D
9 10parallel
Strand 3
C
9 10parallel
Strand 4
B
9 10parallel
Strand 5
A
9 10parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
19 21first strand
Strand 2
D
19 21parallel
Strand 3
C
19 21parallel
Strand 4
B
19 21parallel
Strand 5
A
19 21parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 25first strand
Strand 2
D
24 25parallel
Strand 3
C
24 25parallel
Strand 4
B
24 25parallel
Strand 5
A
24 25parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 39first strand
Strand 2
D
28 39parallel
Strand 3
C
28 39parallel
Strand 4
B
28 39parallel
Strand 5
A
28 39parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 66first strand
Strand 2
D
61 66parallel
Strand 3
C
61 66parallel
Strand 4
B
61 66parallel
Strand 5
A
61 66parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 78first strand
Strand 2
D
70 78parallel
Strand 3
C
70 78parallel
Strand 4
B
70 78parallel
Strand 5
A
70 78parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 82first strand
Strand 2
D
81 82parallel
Strand 3
C
81 82parallel
Strand 4
B
81 82parallel
Strand 5
A
81 82parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 97first strand
Strand 2
D
88 97parallel
Strand 3
C
88 97parallel
Strand 4
B
88 97parallel
Strand 5
A
88 97parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 102first strand
Strand 2
D
100 102parallel
Strand 3
C
100 102parallel
Strand 4
B
100 102parallel
Strand 5
A
100 102parallel
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