Analysis of interatomic Contacts of Structural Units in PDB entry:
9OKE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OKE entry

There are 9 chains in PDB entry 9OKE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	PHE 34	ALA 172
K	THR 2	SER 123
I	ALA 308	MET 661
M	LYS 20	VAL 180
L	ILE 27	ASP 293
N	MET 1	ASP 328
O	ILE 78	GLY 272
P	GLN 67	VAL 291
T	LEU 812	ALA 836

There are 69 helices in PDB entry 9OKE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	34	61	Right-handed alpha
Helix 2	AA2	H	63	68	Right-handed alpha
Helix 3	AA3	H	73	108	Right-handed alpha
Helix 4	AA4	H	109	113	Right-handed 310
Helix 5	AA5	H	114	169	Right-handed alpha
Helix 6	AA6	K	3	34	Right-handed alpha
Helix 7	AA7	K	42	62	Right-handed alpha
Helix 8	AA8	K	71	123	Right-handed alpha
Helix 9	AA9	I	309	313	Right-handed alpha
Helix 10	AB1	I	315	334	Right-handed alpha
Helix 11	AB2	I	341	360	Right-handed alpha
Helix 12	AB3	I	363	374	Right-handed alpha
Helix 13	AB4	I	375	377	Right-handed 310
Helix 14	AB5	I	382	391	Right-handed alpha
Helix 15	AB6	I	397	413	Right-handed alpha
Helix 16	AB7	I	416	438	Right-handed alpha
Helix 17	AB8	I	444	448	Right-handed 310
Helix 18	AB9	I	451	477	Right-handed alpha
Helix 19	AC1	I	480	501	Right-handed alpha
Helix 20	AC2	I	510	520	Right-handed alpha
Helix 21	AC3	I	522	547	Right-handed alpha
Helix 22	AC4	I	550	573	Right-handed alpha
Helix 23	AC5	I	578	582	Right-handed 310
Helix 24	AC6	I	584	588	Right-handed 310
Helix 25	AC7	I	589	600	Right-handed alpha
Helix 26	AC8	I	602	607	Right-handed alpha
Helix 27	AC9	I	612	624	Right-handed alpha
Helix 28	AD1	I	629	632	Right-handed 310
Helix 29	AD2	I	633	645	Right-handed alpha
Helix 30	AD3	I	645	656	Right-handed alpha
Helix 31	AD4	I	656	661	Right-handed alpha
Helix 32	AD5	M	31	49	Right-handed alpha
Helix 33	AD6	M	63	73	Right-handed alpha
Helix 34	AD7	M	91	102	Right-handed alpha
Helix 35	AD8	M	104	108	Right-handed 310
Helix 36	AD9	M	121	125	Right-handed 310
Helix 37	AE1	M	128	139	Right-handed alpha
Helix 38	AE2	M	150	170	Right-handed alpha
Helix 39	AE3	L	50	67	Right-handed alpha
Helix 40	AE4	L	142	158	Right-handed alpha
Helix 41	AE5	L	167	182	Right-handed alpha
Helix 42	AE6	L	211	221	Right-handed alpha
Helix 43	AE7	L	227	248	Right-handed alpha
Helix 44	AE8	L	276	291	Right-handed alpha
Helix 45	AE9	N	2	17	Right-handed alpha
Helix 46	AF1	N	18	25	Right-handed alpha
Helix 47	AF2	N	25	30	Right-handed alpha
Helix 48	AF3	N	33	43	Right-handed alpha
Helix 49	AF4	N	49	65	Right-handed alpha
Helix 50	AF5	N	67	83	Right-handed alpha
Helix 51	AF6	N	102	120	Right-handed alpha
Helix 52	AF7	N	173	185	Right-handed alpha
Helix 53	AF8	N	198	207	Right-handed alpha
Helix 54	AF9	N	238	251	Right-handed alpha
Helix 55	AG1	N	288	299	Right-handed alpha
Helix 56	AG2	N	306	311	Right-handed 310
Helix 57	AG3	N	323	327	Right-handed 310
Helix 58	AG4	O	79	93	Right-handed alpha
Helix 59	AG5	O	128	131	Right-handed 310
Helix 60	AG6	O	144	150	Right-handed alpha
Helix 61	AG7	O	157	186	Right-handed alpha
Helix 62	AG8	O	260	269	Right-handed alpha
Helix 63	AG9	P	68	87	Right-handed alpha
Helix 64	AH1	P	157	166	Right-handed alpha
Helix 65	AH2	P	167	172	Right-handed 310
Helix 66	AH3	P	174	204	Right-handed alpha
Helix 67	AH4	P	253	267	Right-handed alpha
Helix 68	AH5	P	273	291	Right-handed alpha
Helix 69	AH6	T	813	836	Right-handed alpha

There are 9 sheets in PDB entry 9OKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	54	60	first strand
Strand 2	M	22	28	parallel
Strand 3	M	81	85	parallel
Strand 4	M	112	116	parallel
Strand 5	M	142	145	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	37	first strand
Strand 2	L	271	274	anti-parallel
Strand 3	L	264	267	anti-parallel
Strand 4	L	256	260	anti-parallel
Strand 5	L	189	195	anti-parallel
Strand 6	L	203	210	anti-parallel
Strand 7	N	277	286	anti-parallel
Strand 8	N	259	267	anti-parallel
Strand 9	N	319	322	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	84	first strand
Strand 2	L	96	103	anti-parallel
Strand 3	L	113	120	anti-parallel
Strand 4	L	136	141	anti-parallel
Strand 5	L	39	41	anti-parallel
Strand 6	L	161	163	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	127	135	first strand
Strand 2	N	138	146	anti-parallel
Strand 3	N	151	159	anti-parallel
Strand 4	N	165	168	anti-parallel
Strand 5	N	89	97	anti-parallel
Strand 6	N	186	196	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	228	229	first strand
Strand 2	N	234	235	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	94	100	first strand
Strand 2	O	104	110	anti-parallel
Strand 3	O	120	126	anti-parallel
Strand 4	O	133	137	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	190	192	first strand
Strand 2	O	201	204	anti-parallel
Strand 3	O	218	223	anti-parallel
Strand 4	O	233	236	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	92	97	first strand
Strand 2	P	115	125	anti-parallel
Strand 3	P	128	138	anti-parallel
Strand 4	P	147	155	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	207	211	first strand
Strand 2	P	217	221	anti-parallel
Strand 3	P	225	232	anti-parallel
Strand 4	P	242	249	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OKE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OKE