Analysis of interatomic Contacts of Structural Units in PDB entry:
9OKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OKR entry

There are 4 chains in PDB entry 9OKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1LYS 257
C
 MET 1LYS 257
D
 THR 2THR 203
E
 THR 2THR 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9OKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 30Right-handed alpha
Helix 2
AA2
B
31 41Right-handed alpha
Helix 3
AA3
B
41 53Right-handed alpha
Helix 4
AA4
B
55 75Right-handed alpha
Helix 5
AA5
B
82 104Right-handed alpha
Helix 6
AA6
B
111 117Right-handed alpha
Helix 7
AA7
B
123 144Right-handed alpha
Helix 8
AA8
B
145 154Right-handed alpha
Helix 9
AA9
B
154 162Right-handed alpha
Helix 10
AB1
B
164 184Right-handed alpha
Helix 11
AB2
B
191 205Right-handed alpha
Helix 12
AB3
B
209 235Right-handed alpha
Helix 13
AB4
B
239 255Right-handed alpha
Helix 14
AB5
C
2 30Right-handed alpha
Helix 15
AB6
C
31 41Right-handed alpha
Helix 16
AB7
C
41 53Right-handed alpha
Helix 17
AB8
C
55 75Right-handed alpha
Helix 18
AB9
C
82 104Right-handed alpha
Helix 19
AC1
C
111 117Right-handed alpha
Helix 20
AC2
C
123 144Right-handed alpha
Helix 21
AC3
C
145 154Right-handed alpha
Helix 22
AC4
C
154 162Right-handed alpha
Helix 23
AC5
C
164 184Right-handed alpha
Helix 24
AC6
C
191 205Right-handed alpha
Helix 25
AC7
C
209 235Right-handed alpha
Helix 26
AC8
C
239 255Right-handed alpha
Helix 27
AC9
D
42 51Right-handed alpha
Helix 28
AD1
D
85 91Right-handed alpha
Helix 29
AD2
D
97 99Right-handed 310
Helix 30
AD3
D
100 108Right-handed alpha
Helix 31
AD4
D
110 114Right-handed 310
Helix 32
AD5
D
122 137Right-handed alpha
Helix 33
AD6
D
152 171Right-handed alpha
Helix 34
AD7
E
42 51Right-handed alpha
Helix 35
AD8
E
85 91Right-handed alpha
Helix 36
AD9
E
97 99Right-handed 310
Helix 37
AE1
E
100 108Right-handed alpha
Helix 38
AE2
E
110 114Right-handed 310
Helix 39
AE3
E
122 137Right-handed alpha
Helix 40
AE4
E
152 171Right-handed alpha
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There are 6 sheets in PDB entry 9OKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 26first strand
Strand 2
D
5 10anti-parallel
Strand 3
D
60 63anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
17 18anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 72first strand
Strand 2
D
141 145parallel
Strand 3
D
173 177parallel
Strand 4
D
32 36parallel
Strand 5
D
190 194parallel
Strand 6
D
198 202anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
23 26first strand
Strand 2
E
5 10anti-parallel
Strand 3
E
60 63anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 14first strand
Strand 2
E
17 18anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 72first strand
Strand 2
E
141 145parallel
Strand 3
E
173 177parallel
Strand 4
E
32 36parallel
Strand 5
E
190 194parallel
Strand 6
E
198 202anti-parallel
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