Analysis of interatomic Contacts of Structural Units in PDB entry:
9OLU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OLU entry

There are 2 chains in PDB entry 9OLU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 227	VAL 523
B	GLU 227	VAL 523

There are 13 helices in PDB entry 9OLU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	235	239	Right-handed 310
Helix 2	AA2	A	281	285	Right-handed 310
Helix 3	AA3	A	353	355	Right-handed 310
Helix 4	AA4	A	356	359	Right-handed 310
Helix 5	AA5	A	389	395	Right-handed 310
Helix 6	AA6	A	448	457	Right-handed alpha
Helix 7	AA7	B	235	239	Right-handed 310
Helix 8	AA8	B	281	285	Right-handed 310
Helix 9	AA9	B	314	318	Right-handed 310
Helix 10	AB1	B	353	355	Right-handed 310
Helix 11	AB2	B	356	359	Right-handed 310
Helix 12	AB3	B	389	395	Right-handed 310
Helix 13	AB4	B	448	458	Right-handed alpha

There are 8 sheets in PDB entry 9OLU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	445	first strand
Strand 2	A	421	428	anti-parallel
Strand 3	A	250	253	anti-parallel
Strand 4	A	500	501	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	445	first strand
Strand 2	A	421	428	anti-parallel
Strand 3	A	490	494	anti-parallel
Strand 4	A	479	486	anti-parallel
Strand 5	A	466	472	anti-parallel
Strand 6	A	507	514	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	351	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	377	386	anti-parallel
Strand 4	A	287	292	anti-parallel
Strand 5	A	301	306	anti-parallel
Strand 6	A	361	364	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	351	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	377	386	anti-parallel
Strand 4	A	432	433	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	445	first strand
Strand 2	B	421	428	anti-parallel
Strand 3	B	250	253	anti-parallel
Strand 4	B	500	501	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	445	first strand
Strand 2	B	421	428	anti-parallel
Strand 3	B	490	494	anti-parallel
Strand 4	B	479	486	anti-parallel
Strand 5	B	466	473	anti-parallel
Strand 6	B	506	514	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	351	first strand
Strand 2	B	332	339	anti-parallel
Strand 3	B	377	386	anti-parallel
Strand 4	B	287	292	anti-parallel
Strand 5	B	301	306	anti-parallel
Strand 6	B	361	364	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	351	first strand
Strand 2	B	332	339	anti-parallel
Strand 3	B	377	386	anti-parallel
Strand 4	B	432	433	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OLU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OLU