Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OMF entry

There are 5 chains in PDB entry 9OMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10PHE 354
B
 GLU 16ALA 780
C
 MET 29LYS 113
D
 ASP 2GLN 106
E
 MET 1ASP 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9OMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
27 36Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
66 76Right-handed alpha
Helix 5
AA5
A
92 102Right-handed alpha
Helix 6
AA6
A
114 132Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
170 173Right-handed 310
Helix 9
AA9
A
174 179Right-handed alpha
Helix 10
AB1
A
242 263Right-handed alpha
Helix 11
AB2
A
332 336Right-handed alpha
Helix 12
AB3
A
342 350Right-handed alpha
Helix 13
AB4
B
22 31Right-handed alpha
Helix 14
AB5
B
36 53Right-handed alpha
Helix 15
AB6
B
56 82Right-handed alpha
Helix 16
AB7
B
85 104Right-handed alpha
Helix 17
AB8
B
133 147Right-handed alpha
Helix 18
AB9
B
147 167Right-handed alpha
Helix 19
AC1
B
174 187Right-handed alpha
Helix 20
AC2
B
196 202Right-handed alpha
Helix 21
AC3
B
202 218Right-handed alpha
Helix 22
AC4
B
218 223Right-handed alpha
Helix 23
AC5
B
226 249Right-handed alpha
Helix 24
AC6
B
256 270Right-handed alpha
Helix 25
AC7
B
270 287Right-handed alpha
Helix 26
AC8
B
292 301Right-handed alpha
Helix 27
AC9
B
303 334Right-handed alpha
Helix 28
AD1
B
336 359Right-handed alpha
Helix 29
AD2
B
362 374Right-handed alpha
Helix 30
AD3
B
406 417Right-handed alpha
Helix 31
AD4
B
419 425Right-handed alpha
Helix 32
AD5
B
426 442Right-handed alpha
Helix 33
AD6
B
447 464Right-handed alpha
Helix 34
AD7
B
469 484Right-handed alpha
Helix 35
AD8
B
486 491Right-handed alpha
Helix 36
AD9
B
491 512Right-handed alpha
Helix 37
AE1
B
522 524Right-handed 310
Helix 38
AE2
B
534 536Right-handed 310
Helix 39
AE3
B
548 553Right-handed alpha
Helix 40
AE4
B
554 566Right-handed alpha
Helix 41
AE5
B
597 608Right-handed alpha
Helix 42
AE6
B
616 624Right-handed alpha
Helix 43
AE7
B
626 639Right-handed alpha
Helix 44
AE8
B
656 660Right-handed 310
Helix 45
AE9
B
689 694Right-handed 310
Helix 46
AF1
B
697 726Right-handed alpha
Helix 47
AF2
B
731 742Right-handed alpha
Helix 48
AF3
B
743 745Right-handed 310
Helix 49
AF4
B
749 763Right-handed alpha
Helix 50
AF5
C
61 65Right-handed 310
Helix 51
AF6
C
88 93Right-handed alpha
Helix 52
AF7
D
23 36Right-handed alpha
Helix 53
AF8
D
63 67Right-handed 310
Helix 54
AF9
E
17 21Right-handed alpha
Helix 55
AG1
E
23 29Right-handed alpha
Helix 56
AG2
E
50 67Right-handed alpha
Helix 57
AG3
E
83 92Right-handed alpha
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There are 8 sheets in PDB entry 9OMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
107 112parallel
Strand 3
A
83 87parallel
Strand 4
A
160 165parallel
Strand 5
A
181 191parallel
Strand 6
A
194 200anti-parallel
Strand 7
A
206 213anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 532first strand
Strand 2
C
34 42parallel
Strand 3
B
570 573anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 532first strand
Strand 2
C
34 42parallel
Strand 3
B
579 585anti-parallel
Strand 4
B
590 596anti-parallel
Strand 5
B
685 687parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
614 615first strand
Strand 2
B
665 668anti-parallel
Strand 3
B
648 650anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
675 676first strand
Strand 2
B
679 680anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
728 730first strand
Strand 2
B
772 777anti-parallel
Strand 3
B
767 769anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 76first strand
Strand 2
C
84 85anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 75first strand
Strand 2
D
3 9parallel
Strand 3
D
12 18anti-parallel
Strand 4
E
12 16parallel
Strand 5
E
2 6anti-parallel
Strand 6
E
43 45parallel
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