Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OMG entry

There are 8 chains in PDB entry 9OMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 33	VAL 505
B	LEU 520	LEU 661
C	ASN 33	VAL 505
E	ASN 33	VAL 505
F	LEU 520	LEU 661
G	LEU 520	LEU 661
H	GLU 1	SER 113
L	ASP 1	GLU 105

There are 47 helices in PDB entry 9OMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	74	Right-handed 310
Helix 2	AA2	A	96	98	Right-handed 310
Helix 3	AA3	A	99	117	Right-handed alpha
Helix 4	AA4	A	122	126	Right-handed 310
Helix 5	AA5	A	334	350	Right-handed alpha
Helix 6	AA6	A	351	354	Right-handed 310
Helix 7	AA7	A	368	373	Right-handed alpha
Helix 8	AA8	A	377	381	Right-handed 310
Helix 9	AA9	A	387	390	Right-handed 310
Helix 10	AB1	A	475	481	Right-handed alpha
Helix 11	AB2	A	482	486	Right-handed 310
Helix 12	AB3	B	529	534	Right-handed alpha
Helix 13	AB4	B	536	542	Right-handed alpha
Helix 14	AB5	B	543	545	Right-handed 310
Helix 15	AB6	B	570	596	Right-handed alpha
Helix 16	AB7	B	618	626	Right-handed alpha
Helix 17	AB8	B	628	636	Right-handed alpha
Helix 18	AB9	B	638	661	Right-handed alpha
Helix 19	AC1	C	70	74	Right-handed 310
Helix 20	AC2	C	98	117	Right-handed alpha
Helix 21	AC3	C	122	126	Right-handed 310
Helix 22	AC4	C	150	152	Right-handed 310
Helix 23	AC5	C	335	353	Right-handed alpha
Helix 24	AC6	C	368	373	Right-handed alpha
Helix 25	AC7	C	474	479	Right-handed alpha
Helix 26	AC8	E	99	117	Right-handed alpha
Helix 27	AC9	E	122	126	Right-handed 310
Helix 28	AD1	E	150	152	Right-handed 310
Helix 29	AD2	E	335	354	Right-handed alpha
Helix 30	AD3	E	368	373	Right-handed alpha
Helix 31	AD4	E	377	381	Right-handed 310
Helix 32	AD5	E	475	481	Right-handed alpha
Helix 33	AD6	E	482	484	Right-handed 310
Helix 34	AD7	F	531	535	Right-handed 310
Helix 35	AD8	F	536	543	Right-handed alpha
Helix 36	AD9	F	570	596	Right-handed alpha
Helix 37	AE1	F	618	625	Right-handed alpha
Helix 38	AE2	F	627	636	Right-handed alpha
Helix 39	AE3	F	638	661	Right-handed alpha
Helix 40	AE4	G	529	534	Right-handed alpha
Helix 41	AE5	G	536	543	Right-handed alpha
Helix 42	AE6	G	570	595	Right-handed alpha
Helix 43	AE7	G	618	625	Right-handed alpha
Helix 44	AE8	G	627	635	Right-handed alpha
Helix 45	AE9	G	639	661	Right-handed alpha
Helix 46	AF1	H	28	32	Right-handed 310
Helix 47	AF2	H	83	87	Right-handed 310

There are 33 sheets in PDB entry 9OMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	499	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	154	162	anti-parallel
Strand 5	A	169	177	anti-parallel
Strand 6	H	100	100	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	457	anti-parallel
Strand 3	A	283	298	anti-parallel
Strand 4	A	330	333	anti-parallel
Strand 5	A	414	420	anti-parallel
Strand 6	A	383	385	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	283	298	anti-parallel
Strand 3	A	443	457	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	357	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	307	first strand
Strand 2	A	317	323	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	499	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	53	56	parallel
Strand 3	C	216	218	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	237	238	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	177	first strand
Strand 2	C	154	162	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	433	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	261	first strand
Strand 2	C	444	455	anti-parallel
Strand 3	C	284	297	anti-parallel
Strand 4	C	330	334	anti-parallel
Strand 5	C	413	421	anti-parallel
Strand 6	C	382	385	anti-parallel
Strand 7	C	374	375	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	297	anti-parallel
Strand 3	C	444	455	anti-parallel
Strand 4	C	469	470	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	317	320	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	465	466	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	G	603	609	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	216	218	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	444	456	anti-parallel
Strand 3	E	284	297	anti-parallel
Strand 4	E	329	334	anti-parallel
Strand 5	E	413	421	anti-parallel
Strand 6	E	382	385	anti-parallel
Strand 7	E	374	375	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	297	anti-parallel
Strand 3	E	444	456	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	357	361	parallel
Strand 6	E	393	394	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	308	first strand
Strand 2	E	316	323	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	65	67	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMG