Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OMH entry

There are 3 chains in PDB entry 9OMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3HIS 277
B
 GLU 3HIS 274
C
 GLU 3GLY 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 9OMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 28Right-handed alpha
Helix 2
AA2
A
46 53Right-handed alpha
Helix 3
AA3
A
68 80Right-handed alpha
Helix 4
AA4
A
97 107Right-handed alpha
Helix 5
AA5
A
130 136Right-handed 310
Helix 6
AA6
A
141 143Right-handed 310
Helix 7
AA7
A
149 156Right-handed alpha
Helix 8
AA8
A
165 177Right-handed alpha
Helix 9
AA9
A
200 216Right-handed alpha
Helix 10
AB1
A
220 232Right-handed alpha
Helix 11
AB2
A
239 248Right-handed alpha
Helix 12
AB3
A
251 262Right-handed alpha
Helix 13
AB4
A
265 277Right-handed alpha
Helix 14
AB5
B
18 28Right-handed alpha
Helix 15
AB6
B
46 53Right-handed alpha
Helix 16
AB7
B
68 78Right-handed alpha
Helix 17
AB8
B
97 108Right-handed alpha
Helix 18
AB9
B
130 136Right-handed 310
Helix 19
AC1
B
141 143Right-handed 310
Helix 20
AC2
B
149 156Right-handed alpha
Helix 21
AC3
B
165 177Right-handed alpha
Helix 22
AC4
B
201 216Right-handed alpha
Helix 23
AC5
B
220 232Right-handed alpha
Helix 24
AC6
B
239 248Right-handed alpha
Helix 25
AC7
B
251 262Right-handed alpha
Helix 26
AC8
B
267 274Right-handed alpha
Helix 27
AC9
C
18 28Right-handed alpha
Helix 28
AD1
C
46 53Right-handed alpha
Helix 29
AD2
C
68 80Right-handed alpha
Helix 30
AD3
C
97 107Right-handed alpha
Helix 31
AD4
C
130 136Right-handed 310
Helix 32
AD5
C
141 143Right-handed 310
Helix 33
AD6
C
149 156Right-handed alpha
Helix 34
AD7
C
165 177Right-handed alpha
Helix 35
AD8
C
201 216Right-handed alpha
Helix 36
AD9
C
220 232Right-handed alpha
Helix 37
AE1
C
239 248Right-handed alpha
Helix 38
AE2
C
251 262Right-handed alpha
Helix 39
AE3
D
18 28Right-handed alpha
Helix 40
AE4
D
46 54Right-handed alpha
Helix 41
AE5
D
68 80Right-handed alpha
Helix 42
AE6
D
97 107Right-handed alpha
Helix 43
AE7
D
130 136Right-handed 310
Helix 44
AE8
D
141 143Right-handed 310
Helix 45
AE9
D
149 156Right-handed alpha
Helix 46
AF1
D
165 177Right-handed alpha
Helix 47
AF2
D
201 216Right-handed alpha
Helix 48
AF3
D
220 232Right-handed alpha
Helix 49
AF4
D
239 248Right-handed alpha
Helix 50
AF5
D
251 262Right-handed alpha
Helix 51
AF6
D
265 277Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9OMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
34 40parallel
Strand 3
A
6 12parallel
Strand 4
A
84 87parallel
Strand 5
A
145 148anti-parallel
Strand 6
A
112 119anti-parallel
Strand 7
A
181 191parallel
Strand 8
A
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
34 40parallel
Strand 3
A
6 12parallel
Strand 4
A
84 87parallel
Strand 5
A
145 148anti-parallel
Strand 6
A
112 119anti-parallel
Strand 7
A
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
34 40parallel
Strand 3
B
6 12parallel
Strand 4
B
84 87parallel
Strand 5
B
145 148anti-parallel
Strand 6
B
112 119anti-parallel
Strand 7
B
181 191parallel
Strand 8
B
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
34 40parallel
Strand 3
B
6 12parallel
Strand 4
B
84 87parallel
Strand 5
B
145 148anti-parallel
Strand 6
B
112 119anti-parallel
Strand 7
B
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
34 40parallel
Strand 3
C
4 12parallel
Strand 4
C
82 87parallel
Strand 5
C
145 148anti-parallel
Strand 6
C
112 119anti-parallel
Strand 7
C
181 191parallel
Strand 8
C
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
34 40parallel
Strand 3
C
4 12parallel
Strand 4
C
82 87parallel
Strand 5
C
145 148anti-parallel
Strand 6
C
112 119anti-parallel
Strand 7
C
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
34 40parallel
Strand 3
D
6 12parallel
Strand 4
D
84 87parallel
Strand 5
D
145 148anti-parallel
Strand 6
D
112 119anti-parallel
Strand 7
D
181 191parallel
Strand 8
D
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
34 40parallel
Strand 3
D
6 12parallel
Strand 4
D
84 87parallel
Strand 5
D
145 148anti-parallel
Strand 6
D
112 119anti-parallel
Strand 7
D
122 123anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il