Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OMP entry

There is 1 chain in PDB entry 9OMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 41ILE 807
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9OMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 92Right-handed alpha
Helix 2
AA2
A
111 128Right-handed alpha
Helix 3
AA3
A
159 171Right-handed alpha
Helix 4
AA4
A
201 217Right-handed alpha
Helix 5
AA5
A
230 246Right-handed alpha
Helix 6
AA6
A
265 275Right-handed alpha
Helix 7
AA7
A
288 302Right-handed alpha
Helix 8
AA8
A
326 331Right-handed alpha
Helix 9
AA9
A
344 351Right-handed alpha
Helix 10
AB1
A
363 373Right-handed alpha
Helix 11
AB2
A
395 400Right-handed alpha
Helix 12
AB3
A
407 430Right-handed alpha
Helix 13
AB4
A
438 443Right-handed alpha
Helix 14
AB5
A
445 454Right-handed alpha
Helix 15
AB6
A
506 509Right-handed 310
Helix 16
AB7
A
591 609Right-handed alpha
Helix 17
AB8
A
610 613Right-handed 310
Helix 18
AB9
A
620 624Right-handed 310
Helix 19
AC1
A
625 648Right-handed alpha
Helix 20
AC2
A
655 686Right-handed alpha
Helix 21
AC3
A
699 724Right-handed alpha
Helix 22
AC4
A
752 774Right-handed alpha
Helix 23
AC5
A
783 809Right-handed alpha
Helix 24
AC6
A
819 841Right-handed alpha
Helix 25
AC7
A
842 844Right-handed 310
Helix 26
AC8
A
845 850Right-handed alpha
Helix 27
AC9
B
76 92Right-handed alpha
Helix 28
AD1
B
111 128Right-handed alpha
Helix 29
AD2
B
159 173Right-handed alpha
Helix 30
AD3
B
201 217Right-handed alpha
Helix 31
AD4
B
227 246Right-handed alpha
Helix 32
AD5
B
265 275Right-handed alpha
Helix 33
AD6
B
288 302Right-handed alpha
Helix 34
AD7
B
326 331Right-handed alpha
Helix 35
AD8
B
344 352Right-handed alpha
Helix 36
AD9
B
363 373Right-handed alpha
Helix 37
AE1
B
395 400Right-handed alpha
Helix 38
AE2
B
407 430Right-handed alpha
Helix 39
AE3
B
437 443Right-handed alpha
Helix 40
AE4
B
445 454Right-handed alpha
Helix 41
AE5
B
506 509Right-handed 310
Helix 42
AE6
B
591 609Right-handed alpha
Helix 43
AE7
B
610 613Right-handed 310
Helix 44
AE8
B
620 624Right-handed 310
Helix 45
AE9
B
625 648Right-handed alpha
Helix 46
AF1
B
655 664Right-handed alpha
Helix 47
AF2
B
666 686Right-handed alpha
Helix 48
AF3
B
699 724Right-handed alpha
Helix 49
AF4
B
752 778Right-handed alpha
Helix 50
AF5
B
784 809Right-handed alpha
Helix 51
AF6
B
819 850Right-handed alpha
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There are 9 sheets in PDB entry 9OMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
102 105anti-parallel
Strand 3
A
50 53parallel
Strand 4
A
150 154parallel
Strand 5
A
176 178parallel
Strand 6
A
196 197parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 253first strand
Strand 2
A
220 224parallel
Strand 3
A
282 285parallel
Strand 4
A
309 312parallel
Strand 5
A
334 338parallel
Strand 6
A
477 482anti-parallel
Strand 7
A
492 498anti-parallel
Strand 8
A
502 504anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
464 465anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 555first strand
Strand 2
A
559 560anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
102 105anti-parallel
Strand 3
B
50 53parallel
Strand 4
B
150 154parallel
Strand 5
B
176 178parallel
Strand 6
B
196 197parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 255first strand
Strand 2
B
220 225parallel
Strand 3
B
282 285parallel
Strand 4
B
309 312parallel
Strand 5
B
334 338parallel
Strand 6
B
477 481anti-parallel
Strand 7
B
493 498anti-parallel
Strand 8
B
502 504anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 458first strand
Strand 2
B
464 465anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
554 555first strand
Strand 2
B
559 560anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
728 729first strand
Strand 2
B
748 749anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il