Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OMY entry

There are 8 chains in PDB entry 9OMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 32	LYS 338
B	PRO 24	ALA 337
C	THR 96	ARG 347
X	MET 1	HIS 346
D	GLY 32	LYS 338
E	PRO 24	ALA 337
F	THR 96	ARG 347
G	MET 1	HIS 346

There are106 helices in PDB entry 9OMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	54	Right-handed alpha
Helix 2	AA2	A	56	62	Right-handed alpha
Helix 3	AA3	A	67	82	Right-handed alpha
Helix 4	AA4	A	89	95	Right-handed alpha
Helix 5	AA5	A	106	113	Right-handed alpha
Helix 6	AA6	A	132	144	Right-handed alpha
Helix 7	AA7	A	145	146	Right-handed 310
Helix 8	AA8	A	147	151	Right-handed 310
Helix 9	AA9	A	167	179	Right-handed alpha
Helix 10	AB1	A	181	189	Right-handed alpha
Helix 11	AB2	A	196	212	Right-handed alpha
Helix 12	AB3	A	235	260	Right-handed alpha
Helix 13	AB4	A	289	296	Right-handed alpha
Helix 14	AB5	B	27	31	Right-handed 310
Helix 15	AB6	B	36	43	Right-handed alpha
Helix 16	AB7	B	48	52	Right-handed 310
Helix 17	AB8	B	56	63	Right-handed alpha
Helix 18	AB9	B	67	79	Right-handed alpha
Helix 19	AC1	B	80	82	Right-handed 310
Helix 20	AC2	B	89	97	Right-handed alpha
Helix 21	AC3	B	106	113	Right-handed alpha
Helix 22	AC4	B	134	144	Right-handed alpha
Helix 23	AC5	B	167	179	Right-handed alpha
Helix 24	AC6	B	181	189	Right-handed alpha
Helix 25	AC7	B	196	211	Right-handed alpha
Helix 26	AC8	B	226	232	Right-handed alpha
Helix 27	AC9	B	237	260	Right-handed alpha
Helix 28	AD1	B	291	296	Right-handed alpha
Helix 29	AD2	C	106	112	Right-handed alpha
Helix 30	AD3	C	130	142	Right-handed alpha
Helix 31	AD4	C	165	188	Right-handed alpha
Helix 32	AD5	C	189	194	Right-handed alpha
Helix 33	AD6	C	200	207	Right-handed alpha
Helix 34	AD7	C	215	233	Right-handed alpha
Helix 35	AD8	C	245	249	Right-handed 310
Helix 36	AD9	C	255	264	Right-handed alpha
Helix 37	AE1	C	265	276	Right-handed alpha
Helix 38	AE2	X	9	20	Right-handed alpha
Helix 39	AE3	X	24	28	Right-handed alpha
Helix 40	AE4	X	33	40	Right-handed alpha
Helix 41	AE5	X	42	58	Right-handed alpha
Helix 42	AE6	X	64	71	Right-handed alpha
Helix 43	AE7	X	75	80	Right-handed alpha
Helix 44	AE8	X	86	94	Right-handed alpha
Helix 45	AE9	X	112	124	Right-handed alpha
Helix 46	AF1	X	147	157	Right-handed alpha
Helix 47	AF2	X	157	162	Right-handed alpha
Helix 48	AF3	X	166	171	Right-handed alpha
Helix 49	AF4	X	186	197	Right-handed alpha
Helix 50	AF5	X	198	203	Right-handed alpha
Helix 51	AF6	X	215	223	Right-handed alpha
Helix 52	AF7	X	228	250	Right-handed alpha
Helix 53	AF8	X	285	290	Right-handed alpha
Helix 54	AF9	D	48	54	Right-handed alpha
Helix 55	AG1	D	56	62	Right-handed alpha
Helix 56	AG2	D	67	82	Right-handed alpha
Helix 57	AG3	D	89	95	Right-handed alpha
Helix 58	AG4	D	106	113	Right-handed alpha
Helix 59	AG5	D	132	144	Right-handed alpha
Helix 60	AG6	D	145	146	Right-handed 310
Helix 61	AG7	D	147	151	Right-handed 310
Helix 62	AG8	D	167	179	Right-handed alpha
Helix 63	AG9	D	181	189	Right-handed alpha
Helix 64	AH1	D	196	212	Right-handed alpha
Helix 65	AH2	D	235	260	Right-handed alpha
Helix 66	AH3	D	289	296	Right-handed alpha
Helix 67	AH4	E	27	31	Right-handed 310
Helix 68	AH5	E	36	43	Right-handed alpha
Helix 69	AH6	E	48	52	Right-handed 310
Helix 70	AH7	E	56	63	Right-handed alpha
Helix 71	AH8	E	67	79	Right-handed alpha
Helix 72	AH9	E	80	82	Right-handed 310
Helix 73	AI1	E	89	97	Right-handed alpha
Helix 74	AI2	E	106	113	Right-handed alpha
Helix 75	AI3	E	134	144	Right-handed alpha
Helix 76	AI4	E	167	179	Right-handed alpha
Helix 77	AI5	E	181	189	Right-handed alpha
Helix 78	AI6	E	196	211	Right-handed alpha
Helix 79	AI7	E	226	232	Right-handed alpha
Helix 80	AI8	E	237	260	Right-handed alpha
Helix 81	AI9	E	291	296	Right-handed alpha
Helix 82	AJ1	F	106	112	Right-handed alpha
Helix 83	AJ2	F	130	142	Right-handed alpha
Helix 84	AJ3	F	165	188	Right-handed alpha
Helix 85	AJ4	F	189	194	Right-handed alpha
Helix 86	AJ5	F	200	207	Right-handed alpha
Helix 87	AJ6	F	215	233	Right-handed alpha
Helix 88	AJ7	F	245	249	Right-handed 310
Helix 89	AJ8	F	255	264	Right-handed alpha
Helix 90	AJ9	F	265	276	Right-handed alpha
Helix 91	AK1	G	9	20	Right-handed alpha
Helix 92	AK2	G	24	28	Right-handed alpha
Helix 93	AK3	G	33	40	Right-handed alpha
Helix 94	AK4	G	42	58	Right-handed alpha
Helix 95	AK5	G	64	71	Right-handed alpha
Helix 96	AK6	G	75	80	Right-handed alpha
Helix 97	AK7	G	86	94	Right-handed alpha
Helix 98	AK8	G	112	124	Right-handed alpha
Helix 99	AK9	G	147	157	Right-handed alpha
Helix 100	AL1	G	157	162	Right-handed alpha
Helix 101	AL2	G	166	171	Right-handed alpha
Helix 102	AL3	G	186	197	Right-handed alpha
Helix 103	AL4	G	198	203	Right-handed alpha
Helix 104	AL5	G	215	223	Right-handed alpha
Helix 105	AL6	G	228	250	Right-handed alpha
Helix 106	AL7	G	285	290	Right-handed alpha

There are 18 sheets in PDB entry 9OMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	B	190	193	anti-parallel
Strand 3	B	158	161	parallel
Strand 4	B	218	222	parallel
Strand 5	B	262	268	parallel
Strand 6	B	122	127	parallel
Strand 7	B	298	304	parallel
Strand 8	B	309	316	anti-parallel
Strand 9	B	324	329	anti-parallel
Strand 10	B	334	336	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	117	118	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	156	161	parallel
Strand 3	A	216	221	parallel
Strand 4	A	262	267	parallel
Strand 5	A	124	127	parallel
Strand 6	A	299	304	parallel
Strand 7	A	309	316	anti-parallel
Strand 8	A	324	329	anti-parallel
Strand 9	A	334	336	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	X	179	181	anti-parallel
Strand 3	X	136	141	parallel
Strand 4	X	207	213	parallel
Strand 5	X	253	256	parallel
Strand 6	X	102	106	parallel
Strand 7	X	294	299	parallel
Strand 8	X	314	319	anti-parallel
Strand 9	X	327	328	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	117	118	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	155	159	parallel
Strand 3	C	238	242	parallel
Strand 4	C	279	283	parallel
Strand 5	C	120	125	parallel
Strand 6	C	311	318	parallel
Strand 7	C	321	325	anti-parallel
Strand 8	C	338	339	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	288	first strand
Strand 2	C	297	299	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	81	82	first strand
Strand 2	X	97	98	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	330	333	first strand
Strand 2	X	336	339	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	E	190	193	anti-parallel
Strand 3	E	158	161	parallel
Strand 4	E	218	222	parallel
Strand 5	E	262	268	parallel
Strand 6	E	122	127	parallel
Strand 7	E	298	304	parallel
Strand 8	E	309	316	anti-parallel
Strand 9	E	324	329	anti-parallel
Strand 10	E	334	336	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	117	118	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	193	first strand
Strand 2	D	156	161	parallel
Strand 3	D	216	221	parallel
Strand 4	D	262	267	parallel
Strand 5	D	124	127	parallel
Strand 6	D	299	304	parallel
Strand 7	D	309	316	anti-parallel
Strand 8	D	324	329	anti-parallel
Strand 9	D	334	336	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	G	179	181	anti-parallel
Strand 3	G	136	141	parallel
Strand 4	G	207	213	parallel
Strand 5	G	253	256	parallel
Strand 6	G	102	106	parallel
Strand 7	G	294	299	parallel
Strand 8	G	314	319	anti-parallel
Strand 9	G	327	328	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	117	118	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	210	first strand
Strand 2	F	154	159	parallel
Strand 3	F	236	242	parallel
Strand 4	F	279	283	parallel
Strand 5	F	120	125	parallel
Strand 6	F	311	318	parallel
Strand 7	F	321	325	anti-parallel
Strand 8	F	338	339	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	286	288	first strand
Strand 2	F	297	299	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	82	first strand
Strand 2	G	97	98	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	330	333	first strand
Strand 2	G	336	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMY