Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OMZ entry

There are 5 chains in PDB entry 9OMZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 346
C	MET 10	ASP 348
D	GLY 2	TRP 314
B	PRO 24	ASP 339
X	ARG 21	CYS 280

There are 68 helices in PDB entry 9OMZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	9	20	Right-handed alpha
Helix 3	AA3	A	24	29	Right-handed alpha
Helix 4	AA4	A	31	39	Right-handed alpha
Helix 5	AA5	A	42	58	Right-handed alpha
Helix 6	AA6	A	64	71	Right-handed alpha
Helix 7	AA7	A	75	80	Right-handed alpha
Helix 8	AA8	A	86	93	Right-handed alpha
Helix 9	AA9	A	112	124	Right-handed alpha
Helix 10	AB1	A	127	131	Right-handed 310
Helix 11	AB2	A	147	157	Right-handed alpha
Helix 12	AB3	A	157	162	Right-handed alpha
Helix 13	AB4	A	166	173	Right-handed alpha
Helix 14	AB5	A	175	177	Right-handed 310
Helix 15	AB6	A	186	204	Right-handed alpha
Helix 16	AB7	A	215	223	Right-handed alpha
Helix 17	AB8	A	228	250	Right-handed alpha
Helix 18	AB9	A	284	291	Right-handed alpha
Helix 19	AC1	C	20	30	Right-handed alpha
Helix 20	AC2	C	34	40	Right-handed alpha
Helix 21	AC3	C	42	51	Right-handed alpha
Helix 22	AC4	C	53	67	Right-handed alpha
Helix 23	AC5	C	87	97	Right-handed alpha
Helix 24	AC6	C	104	111	Right-handed alpha
Helix 25	AC7	C	130	143	Right-handed alpha
Helix 26	AC8	C	145	149	Right-handed 310
Helix 27	AC9	C	165	187	Right-handed alpha
Helix 28	AD1	C	189	199	Right-handed alpha
Helix 29	AD2	C	200	207	Right-handed alpha
Helix 30	AD3	C	215	233	Right-handed alpha
Helix 31	AD4	C	245	249	Right-handed 310
Helix 32	AD5	C	254	277	Right-handed alpha
Helix 33	AD6	D	13	23	Right-handed alpha
Helix 34	AD7	D	27	34	Right-handed alpha
Helix 35	AD8	D	35	44	Right-handed alpha
Helix 36	AD9	D	46	62	Right-handed alpha
Helix 37	AE1	D	68	79	Right-handed alpha
Helix 38	AE2	D	112	127	Right-handed alpha
Helix 39	AE3	D	142	154	Right-handed alpha
Helix 40	AE4	D	156	166	Right-handed alpha
Helix 41	AE5	D	174	192	Right-handed alpha
Helix 42	AE6	D	207	213	Right-handed alpha
Helix 43	AE7	D	221	239	Right-handed alpha
Helix 44	AE8	D	267	271	Right-handed 310
Helix 45	AE9	B	25	32	Right-handed alpha
Helix 46	AF1	B	34	45	Right-handed alpha
Helix 47	AF2	B	48	54	Right-handed alpha
Helix 48	AF3	B	56	63	Right-handed alpha
Helix 49	AF4	B	67	79	Right-handed alpha
Helix 50	AF5	B	89	97	Right-handed alpha
Helix 51	AF6	B	106	114	Right-handed alpha
Helix 52	AF7	B	132	144	Right-handed alpha
Helix 53	AF8	B	167	178	Right-handed alpha
Helix 54	AF9	B	181	188	Right-handed alpha
Helix 55	AG1	B	196	214	Right-handed alpha
Helix 56	AG2	B	225	232	Right-handed alpha
Helix 57	AG3	B	234	236	Right-handed 310
Helix 58	AG4	B	237	260	Right-handed alpha
Helix 59	AG5	B	289	296	Right-handed alpha
Helix 60	AG6	X	23	28	Right-handed alpha
Helix 61	AG7	X	53	67	Right-handed alpha
Helix 62	AG8	X	88	100	Right-handed alpha
Helix 63	AG9	X	104	114	Right-handed alpha
Helix 64	AH1	X	122	140	Right-handed alpha
Helix 65	AH2	X	154	162	Right-handed alpha
Helix 66	AH3	X	165	170	Right-handed alpha
Helix 67	AH4	X	170	187	Right-handed alpha
Helix 68	AH5	X	228	235	Right-handed alpha

There are 10 sheets in PDB entry 9OMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	97	98	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	327	332	anti-parallel
Strand 3	A	313	319	anti-parallel
Strand 4	A	292	300	anti-parallel
Strand 5	A	102	107	parallel
Strand 6	A	253	257	parallel
Strand 7	A	207	212	parallel
Strand 8	A	136	141	parallel
Strand 9	A	179	183	parallel
Strand 10	B	87	88	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	D	167	171	anti-parallel
Strand 3	D	131	136	parallel
Strand 4	D	200	205	parallel
Strand 5	D	244	253	parallel
Strand 6	D	260	262	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	D	167	171	anti-parallel
Strand 3	D	131	136	parallel
Strand 4	D	200	205	parallel
Strand 5	D	244	253	parallel
Strand 6	D	102	107	parallel
Strand 7	D	274	280	parallel
Strand 8	D	290	298	anti-parallel
Strand 9	D	306	310	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	154	159	parallel
Strand 3	C	236	242	parallel
Strand 4	C	279	285	parallel
Strand 5	C	119	125	parallel
Strand 6	C	311	317	parallel
Strand 7	C	322	328	anti-parallel
Strand 8	C	336	338	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	346	347	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	X	115	119	anti-parallel
Strand 3	X	77	82	parallel
Strand 4	X	143	150	parallel
Strand 5	X	190	194	parallel
Strand 6	X	42	47	parallel
Strand 7	X	237	243	parallel
Strand 8	X	252	259	anti-parallel
Strand 9	X	265	273	anti-parallel
Strand 10	X	276	280	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	117	118	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	193	first strand
Strand 2	B	156	161	parallel
Strand 3	B	216	223	parallel
Strand 4	B	262	271	parallel
Strand 5	B	284	286	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	193	first strand
Strand 2	B	156	161	parallel
Strand 3	B	216	223	parallel
Strand 4	B	262	271	parallel
Strand 5	B	121	127	parallel
Strand 6	B	298	304	parallel
Strand 7	B	309	316	anti-parallel
Strand 8	B	324	330	anti-parallel
Strand 9	B	333	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OMZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OMZ