Analysis of interatomic Contacts of Structural Units in PDB entry:
9ONJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ONJ entry

There are 3 chains in PDB entry 9ONJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 100ILE 458
C
 ALA 18ILE 444
B
 SER 19GLY 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9ONJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 111Right-handed alpha
Helix 2
AA2
A
123 130Right-handed alpha
Helix 3
AA3
A
133 144Right-handed alpha
Helix 4
AA4
A
160 174Right-handed alpha
Helix 5
AA5
A
208 213Right-handed alpha
Helix 6
AA6
A
213 220Right-handed alpha
Helix 7
AA7
A
233 239Right-handed alpha
Helix 8
AA8
A
240 242Right-handed 310
Helix 9
AA9
A
255 265Right-handed alpha
Helix 10
AB1
A
276 292Right-handed alpha
Helix 11
AB2
A
293 322Right-handed alpha
Helix 12
AB3
A
333 346Right-handed alpha
Helix 13
AB4
A
359 368Right-handed alpha
Helix 14
AB5
A
383 392Right-handed alpha
Helix 15
AB6
A
418 422Right-handed 310
Helix 16
AB7
A
426 444Right-handed alpha
Helix 17
AB8
A
445 451Right-handed alpha
Helix 18
AB9
C
19 29Right-handed alpha
Helix 19
AC1
C
76 91Right-handed alpha
Helix 20
AC2
C
111 117Right-handed alpha
Helix 21
AC3
C
119 121Right-handed 310
Helix 22
AC4
C
122 126Right-handed 310
Helix 23
AC5
C
141 158Right-handed alpha
Helix 24
AC6
C
181 194Right-handed alpha
Helix 25
AC7
C
227 233Right-handed alpha
Helix 26
AC8
C
234 237Right-handed 310
Helix 27
AC9
C
247 259Right-handed alpha
Helix 28
AD1
C
270 286Right-handed alpha
Helix 29
AD2
C
290 312Right-handed alpha
Helix 30
AD3
C
321 336Right-handed alpha
Helix 31
AD4
C
348 354Right-handed 310
Helix 32
AD5
C
363 375Right-handed alpha
Helix 33
AD6
C
382 384Right-handed 310
Helix 34
AD7
C
385 392Right-handed alpha
Helix 35
AD8
C
416 435Right-handed alpha
Helix 36
AD9
B
20 30Right-handed alpha
Helix 37
AE1
B
43 57Right-handed alpha
Helix 38
AE2
B
77 91Right-handed alpha
Helix 39
AE3
B
102 108Right-handed alpha
Helix 40
AE4
B
110 122Right-handed alpha
Helix 41
AE5
B
123 126Right-handed 310
Helix 42
AE6
B
141 158Right-handed alpha
Helix 43
AE7
B
161 165Right-handed 310
Helix 44
AE8
B
181 195Right-handed alpha
Helix 45
AE9
B
227 232Right-handed alpha
Helix 46
AF1
B
233 236Right-handed 310
Helix 47
AF2
B
247 259Right-handed alpha
Helix 48
AF3
B
269 286Right-handed alpha
Helix 49
AF4
B
290 307Right-handed alpha
Helix 50
AF5
B
307 312Right-handed alpha
Helix 51
AF6
B
321 334Right-handed alpha
Helix 52
AF7
B
348 354Right-handed 310
Helix 53
AF8
B
363 375Right-handed alpha
Helix 54
AF9
B
385 393Right-handed alpha
Helix 55
AG1
B
417 435Right-handed alpha
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There are 4 sheets in PDB entry 9ONJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
C
99 100parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 202first strand
Strand 2
C
172 175parallel
Strand 3
C
239 242parallel
Strand 4
C
262 264parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
95 100parallel
Strand 3
B
130 134parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
171 175parallel
Strand 3
B
239 242parallel
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