Analysis of interatomic Contacts of Structural Units in PDB entry:
9OO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OO0 entry

There are 2 chains in PDB entry 9OO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 473
B
 SER 2HIS 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9OO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
13 20Right-handed alpha
Helix 3
AA3
A
21 43Right-handed alpha
Helix 4
AA4
A
48 58Right-handed alpha
Helix 5
AA5
A
63 75Right-handed alpha
Helix 6
AA6
A
76 90Right-handed alpha
Helix 7
AA7
A
99 137Right-handed alpha
Helix 8
AA8
A
156 181Right-handed alpha
Helix 9
AA9
A
193 200Right-handed alpha
Helix 10
AB1
A
203 219Right-handed alpha
Helix 11
AB2
A
233 263Right-handed alpha
Helix 12
AB3
A
286 308Right-handed alpha
Helix 13
AB4
A
319 350Right-handed alpha
Helix 14
AB5
A
353 369Right-handed alpha
Helix 15
AB6
A
369 379Right-handed alpha
Helix 16
AB7
A
383 406Right-handed alpha
Helix 17
AB8
A
410 417Right-handed alpha
Helix 18
AB9
A
424 432Right-handed alpha
Helix 19
AC1
A
433 440Right-handed 310
Helix 20
AC2
A
441 460Right-handed alpha
Helix 21
AC3
A
460 465Right-handed alpha
Helix 22
AC4
B
5 11Right-handed alpha
Helix 23
AC5
B
13 20Right-handed alpha
Helix 24
AC6
B
21 43Right-handed alpha
Helix 25
AC7
B
48 59Right-handed alpha
Helix 26
AC8
B
63 75Right-handed alpha
Helix 27
AC9
B
76 90Right-handed alpha
Helix 28
AD1
B
99 137Right-handed alpha
Helix 29
AD2
B
156 181Right-handed alpha
Helix 30
AD3
B
193 200Right-handed alpha
Helix 31
AD4
B
203 218Right-handed alpha
Helix 32
AD5
B
233 263Right-handed alpha
Helix 33
AD6
B
286 310Right-handed alpha
Helix 34
AD7
B
319 350Right-handed alpha
Helix 35
AD8
B
353 369Right-handed alpha
Helix 36
AD9
B
369 381Right-handed alpha
Helix 37
AE1
B
383 406Right-handed alpha
Helix 38
AE2
B
410 417Right-handed alpha
Helix 39
AE3
B
424 431Right-handed alpha
Helix 40
AE4
B
432 433Right-handed 310
Helix 41
AE5
B
434 440Right-handed 310
Helix 42
AE6
B
441 460Right-handed alpha
Helix 43
AE7
B
460 465Right-handed alpha
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There are 6 sheets in PDB entry 9OO0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 146first strand
Strand 2
A
149 155anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
222 223parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
351 352anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 146first strand
Strand 2
B
149 155anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
222 223parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
351 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il