Analysis of interatomic Contacts of Structural Units in PDB entry:
9OOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OOI entry

There are 3 chains in PDB entry 9OOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LYS 183
B
 ARG 3LYS 183
C
 ARG 3ASP 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9OOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 42Right-handed alpha
Helix 2
AA2
A
56 62Right-handed alpha
Helix 3
AA3
A
94 105Right-handed alpha
Helix 4
AA4
A
116 125Right-handed alpha
Helix 5
AA5
A
151 153Right-handed 310
Helix 6
AA6
B
29 42Right-handed alpha
Helix 7
AA7
B
56 62Right-handed alpha
Helix 8
AA8
B
63 67Right-handed 310
Helix 9
AA9
B
94 105Right-handed alpha
Helix 10
AB1
B
116 125Right-handed alpha
Helix 11
AB2
B
151 153Right-handed 310
Helix 12
AB3
C
29 42Right-handed alpha
Helix 13
AB4
C
56 62Right-handed alpha
Helix 14
AB5
C
63 67Right-handed 310
Helix 15
AB6
C
94 105Right-handed alpha
Helix 16
AB7
C
116 125Right-handed alpha
Helix 17
AB8
C
151 153Right-handed 310
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There are 9 sheets in PDB entry 9OOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
72 77parallel
Strand 3
A
49 55parallel
Strand 4
A
108 115parallel
Strand 5
A
6 13parallel
Strand 6
A
129 137parallel
Strand 7
A
170 179anti-parallel
Strand 8
A
155 157anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
72 77parallel
Strand 3
A
49 55parallel
Strand 4
A
108 115parallel
Strand 5
A
6 13parallel
Strand 6
A
129 137parallel
Strand 7
A
170 179anti-parallel
Strand 8
A
165 167anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
145 146anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
72 77parallel
Strand 3
B
49 55parallel
Strand 4
B
108 115parallel
Strand 5
B
6 13parallel
Strand 6
B
129 137parallel
Strand 7
B
170 179anti-parallel
Strand 8
B
155 157anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
72 77parallel
Strand 3
B
49 55parallel
Strand 4
B
108 115parallel
Strand 5
B
6 13parallel
Strand 6
B
129 137parallel
Strand 7
B
170 179anti-parallel
Strand 8
B
164 167anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
145 146anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 92first strand
Strand 2
C
72 77parallel
Strand 3
C
49 55parallel
Strand 4
C
108 115parallel
Strand 5
C
6 13parallel
Strand 6
C
129 137parallel
Strand 7
C
170 179anti-parallel
Strand 8
C
155 157anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 92first strand
Strand 2
C
72 77parallel
Strand 3
C
49 55parallel
Strand 4
C
108 115parallel
Strand 5
C
6 13parallel
Strand 6
C
129 137parallel
Strand 7
C
170 179anti-parallel
Strand 8
C
165 167anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
145 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il