Analysis of interatomic Contacts of Structural Units in PDB entry:
9OOP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OOP entry

There are 4 chains in PDB entry 9OOP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	ASP 812
B	ILE 27	TRP 804
C	ILE 27	TRP 804
D	ILE 27	ASP 812

There are110 helices in PDB entry 9OOP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	54	Right-handed alpha
Helix 2	AA2	A	74	89	Right-handed alpha
Helix 3	AA3	A	98	113	Right-handed alpha
Helix 4	AA4	A	122	126	Right-handed 310
Helix 5	AA5	A	151	163	Right-handed alpha
Helix 6	AA6	A	182	191	Right-handed alpha
Helix 7	AA7	A	203	213	Right-handed alpha
Helix 8	AA8	A	216	227	Right-handed alpha
Helix 9	AA9	A	235	249	Right-handed alpha
Helix 10	AB1	A	268	277	Right-handed alpha
Helix 11	AB2	A	293	298	Right-handed alpha
Helix 12	AB3	A	306	311	Right-handed alpha
Helix 13	AB4	A	316	320	Right-handed 310
Helix 14	AB5	A	321	344	Right-handed alpha
Helix 15	AB6	A	363	374	Right-handed alpha
Helix 16	AB7	A	469	483	Right-handed alpha
Helix 17	AB8	A	506	514	Right-handed alpha
Helix 18	AB9	A	628	659	Right-handed alpha
Helix 19	AC1	A	669	674	Right-handed alpha
Helix 20	AC2	A	685	697	Right-handed alpha
Helix 21	AC3	A	703	713	Right-handed alpha
Helix 22	AC4	A	724	734	Right-handed alpha
Helix 23	AC5	A	743	751	Right-handed alpha
Helix 24	AC6	A	780	795	Right-handed alpha
Helix 25	AC7	A	795	804	Right-handed alpha
Helix 26	AC8	B	37	53	Right-handed alpha
Helix 27	AC9	B	74	87	Right-handed alpha
Helix 28	AD1	B	98	103	Right-handed alpha
Helix 29	AD2	B	105	110	Right-handed alpha
Helix 30	AD3	B	122	126	Right-handed 310
Helix 31	AD4	B	151	156	Right-handed alpha
Helix 32	AD5	B	158	163	Right-handed alpha
Helix 33	AD6	B	177	182	Right-handed 310
Helix 34	AD7	B	186	191	Right-handed alpha
Helix 35	AD8	B	203	215	Right-handed alpha
Helix 36	AD9	B	216	221	Right-handed alpha
Helix 37	AE1	B	222	227	Right-handed alpha
Helix 38	AE2	B	235	249	Right-handed alpha
Helix 39	AE3	B	266	277	Right-handed alpha
Helix 40	AE4	B	293	297	Right-handed 310
Helix 41	AE5	B	306	311	Right-handed alpha
Helix 42	AE6	B	321	344	Right-handed alpha
Helix 43	AE7	B	365	375	Right-handed alpha
Helix 44	AE8	B	469	483	Right-handed alpha
Helix 45	AE9	B	506	514	Right-handed alpha
Helix 46	AF1	B	529	533	Right-handed 310
Helix 47	AF2	B	628	659	Right-handed alpha
Helix 48	AF3	B	667	674	Right-handed alpha
Helix 49	AF4	B	685	697	Right-handed alpha
Helix 50	AF5	B	704	713	Right-handed alpha
Helix 51	AF6	B	724	734	Right-handed alpha
Helix 52	AF7	B	743	752	Right-handed alpha
Helix 53	AF8	B	780	794	Right-handed alpha
Helix 54	AF9	B	795	804	Right-handed alpha
Helix 55	AG1	C	37	53	Right-handed alpha
Helix 56	AG2	C	74	89	Right-handed alpha
Helix 57	AG3	C	98	113	Right-handed alpha
Helix 58	AG4	C	122	126	Right-handed 310
Helix 59	AG5	C	151	156	Right-handed alpha
Helix 60	AG6	C	158	163	Right-handed alpha
Helix 61	AG7	C	177	182	Right-handed 310
Helix 62	AG8	C	183	191	Right-handed alpha
Helix 63	AG9	C	203	215	Right-handed alpha
Helix 64	AH1	C	216	227	Right-handed alpha
Helix 65	AH2	C	235	249	Right-handed alpha
Helix 66	AH3	C	266	277	Right-handed alpha
Helix 67	AH4	C	293	298	Right-handed alpha
Helix 68	AH5	C	306	311	Right-handed alpha
Helix 69	AH6	C	314	319	Right-handed alpha
Helix 70	AH7	C	321	344	Right-handed alpha
Helix 71	AH8	C	365	375	Right-handed alpha
Helix 72	AH9	C	469	482	Right-handed alpha
Helix 73	AI1	C	506	514	Right-handed alpha
Helix 74	AI2	C	529	534	Right-handed alpha
Helix 75	AI3	C	628	659	Right-handed alpha
Helix 76	AI4	C	667	674	Right-handed alpha
Helix 77	AI5	C	685	697	Right-handed alpha
Helix 78	AI6	C	703	713	Right-handed alpha
Helix 79	AI7	C	724	734	Right-handed alpha
Helix 80	AI8	C	742	753	Right-handed alpha
Helix 81	AI9	C	779	795	Right-handed alpha
Helix 82	AJ1	C	795	803	Right-handed alpha
Helix 83	AJ2	D	37	52	Right-handed alpha
Helix 84	AJ3	D	74	89	Right-handed alpha
Helix 85	AJ4	D	98	113	Right-handed alpha
Helix 86	AJ5	D	122	126	Right-handed 310
Helix 87	AJ6	D	151	164	Right-handed alpha
Helix 88	AJ7	D	182	191	Right-handed alpha
Helix 89	AJ8	D	203	213	Right-handed alpha
Helix 90	AJ9	D	216	227	Right-handed alpha
Helix 91	AK1	D	235	248	Right-handed alpha
Helix 92	AK2	D	268	277	Right-handed alpha
Helix 93	AK3	D	293	297	Right-handed 310
Helix 94	AK4	D	306	311	Right-handed alpha
Helix 95	AK5	D	316	320	Right-handed 310
Helix 96	AK6	D	321	344	Right-handed alpha
Helix 97	AK7	D	365	375	Right-handed alpha
Helix 98	AK8	D	459	463	Right-handed 310
Helix 99	AK9	D	469	483	Right-handed alpha
Helix 100	AL1	D	506	514	Right-handed alpha
Helix 101	AL2	D	529	533	Right-handed 310
Helix 102	AL3	D	628	657	Right-handed alpha
Helix 103	AL4	D	667	674	Right-handed alpha
Helix 104	AL5	D	685	695	Right-handed alpha
Helix 105	AL6	D	703	713	Right-handed alpha
Helix 106	AL7	D	724	734	Right-handed alpha
Helix 107	AL8	D	743	751	Right-handed alpha
Helix 108	AL9	D	780	795	Right-handed alpha
Helix 109	AM1	D	795	804	Right-handed alpha
Helix 110	AM2	D	807	811	Right-handed 310

There are 33 sheets in PDB entry 9OOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	70	first strand
Strand 2	A	28	34	parallel
Strand 3	A	92	96	parallel
Strand 4	A	116	118	parallel
Strand 5	A	143	145	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	167	171	parallel
Strand 3	A	230	232	parallel
Strand 4	A	259	260	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	303	304	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	380	first strand
Strand 2	A	383	386	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	426	427	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	490	first strand
Strand 2	A	444	447	parallel
Strand 3	A	519	520	parallel
Strand 4	A	773	774	anti-parallel
Strand 5	A	535	536	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	467	468	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	463	464	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	680	first strand
Strand 2	A	738	742	parallel
Strand 3	A	542	549	anti-parallel
Strand 4	A	759	769	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	70	first strand
Strand 2	B	28	34	parallel
Strand 3	B	93	96	parallel
Strand 4	B	116	119	parallel
Strand 5	B	143	145	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	167	173	parallel
Strand 3	B	229	233	parallel
Strand 4	B	257	261	parallel
Strand 5	B	280	286	parallel
Strand 6	B	398	402	anti-parallel
Strand 7	B	414	420	anti-parallel
Strand 8	B	424	427	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	303	304	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	380	first strand
Strand 2	B	383	385	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	410	411	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	490	first strand
Strand 2	B	442	447	parallel
Strand 3	B	519	521	parallel
Strand 4	B	773	774	anti-parallel
Strand 5	B	535	536	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	463	468	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	680	first strand
Strand 2	B	738	742	parallel
Strand 3	B	541	549	anti-parallel
Strand 4	B	759	770	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	70	first strand
Strand 2	C	28	34	parallel
Strand 3	C	93	96	parallel
Strand 4	C	116	118	parallel
Strand 5	C	143	145	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	200	first strand
Strand 2	C	167	173	parallel
Strand 3	C	229	233	parallel
Strand 4	C	257	261	parallel
Strand 5	C	280	286	parallel
Strand 6	C	398	401	anti-parallel
Strand 7	C	415	420	anti-parallel
Strand 8	C	424	427	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	300	first strand
Strand 2	C	303	304	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	383	384	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	490	first strand
Strand 2	C	442	447	parallel
Strand 3	C	519	521	parallel
Strand 4	C	773	774	anti-parallel
Strand 5	C	535	536	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	467	468	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	679	680	first strand
Strand 2	C	738	741	parallel
Strand 3	C	541	549	anti-parallel
Strand 4	C	759	770	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	70	first strand
Strand 2	D	28	34	parallel
Strand 3	D	92	96	parallel
Strand 4	D	116	118	parallel
Strand 5	D	143	145	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	200	first strand
Strand 2	D	167	173	parallel
Strand 3	D	230	233	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	286	first strand
Strand 2	D	398	400	anti-parallel
Strand 3	D	417	419	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	300	first strand
Strand 2	D	303	304	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	380	first strand
Strand 2	D	383	386	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	406	first strand
Strand 2	D	410	413	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	490	first strand
Strand 2	D	442	447	parallel
Strand 3	D	519	520	parallel
Strand 4	D	773	774	anti-parallel
Strand 5	D	535	536	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	456	first strand
Strand 2	D	467	468	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	679	680	first strand
Strand 2	D	738	742	parallel
Strand 3	D	545	549	anti-parallel
Strand 4	D	759	761	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OOP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OOP