Analysis of interatomic Contacts of Structural Units in PDB entry:
9OPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OPR entry

There are 4 chains in PDB entry 9OPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 142ASP 491
H
 GLN 1PRO 220
L
 ILE 2GLU 213
N
 VAL 5VAL 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9OPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
177 188Right-handed alpha
Helix 2
AA2
A
304 307Right-handed 310
Helix 3
AA3
A
316 320Right-handed 310
Helix 4
AA4
A
406 411Right-handed alpha
Helix 5
AA5
A
477 491Right-handed alpha
Helix 6
AA6
H
28 32Right-handed 310
Helix 7
AA7
H
62 65Right-handed 310
Helix 8
AA8
H
74 76Right-handed 310
Helix 9
AA9
H
87 91Right-handed 310
Helix 10
AB1
H
163 165Right-handed 310
Helix 11
AB2
H
192 196Right-handed 310
Helix 12
AB3
L
79 83Right-handed 310
Helix 13
AB4
L
121 126Right-handed alpha
Helix 14
AB5
L
183 188Right-handed alpha
Helix 15
AB6
N
65 68Right-handed 310
Helix 16
AB7
N
90 94Right-handed 310
Back to top of page

There are 18 sheets in PDB entry 9OPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
167 170anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
236 240anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
225 228anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
398 405anti-parallel
Strand 3
A
424 427anti-parallel
Strand 4
A
472 476anti-parallel
Strand 5
A
452 461anti-parallel
Strand 6
A
444 449anti-parallel
Strand 7
A
378 383anti-parallel
Strand 8
A
398 405anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
278 285anti-parallel
Strand 3
A
290 293anti-parallel
Strand 4
A
347 351anti-parallel
Strand 5
A
326 333anti-parallel
Strand 6
A
309 312anti-parallel
Strand 7
A
270 275anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
114 118parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
114 118parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
104 110anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
127 131first strand
Strand 2
H
143 152anti-parallel
Strand 3
H
183 191anti-parallel
Strand 4
H
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
127 131first strand
Strand 2
H
143 152anti-parallel
Strand 3
H
183 191anti-parallel
Strand 4
H
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
157 161first strand
Strand 2
H
201 207anti-parallel
Strand 3
H
212 218anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
144 150anti-parallel
Strand 3
L
191 198anti-parallel
Strand 4
L
205 210anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
6 10first strand
Strand 2
N
21 28anti-parallel
Strand 3
N
81 86anti-parallel
Strand 4
N
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
13 14first strand
Strand 2
N
118 121parallel
Strand 3
N
95 102anti-parallel
Strand 4
N
36 42anti-parallel
Strand 5
N
49 54anti-parallel
Strand 6
N
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
13 14first strand
Strand 2
N
118 121parallel
Strand 3
N
95 102anti-parallel
Strand 4
N
113 114anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il