Analysis of interatomic Contacts of Structural Units in PDB entry:
9OPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OPY entry

There are 2 chains in PDB entry 9OPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	ILE 831
B	LEU 23	LEU 835

There are 65 helices in PDB entry 9OPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	62	Right-handed 310
Helix 2	AA2	A	65	85	Right-handed alpha
Helix 3	AA3	A	108	116	Right-handed alpha
Helix 4	AA4	A	143	156	Right-handed alpha
Helix 5	AA5	A	168	173	Right-handed 310
Helix 6	AA6	A	186	201	Right-handed alpha
Helix 7	AA7	A	213	228	Right-handed alpha
Helix 8	AA8	A	229	231	Right-handed 310
Helix 9	AA9	A	250	267	Right-handed alpha
Helix 10	AB1	A	280	291	Right-handed alpha
Helix 11	AB2	A	307	312	Right-handed alpha
Helix 12	AB3	A	313	318	Right-handed 310
Helix 13	AB4	A	334	339	Right-handed alpha
Helix 14	AB5	A	365	371	Right-handed alpha
Helix 15	AB6	A	382	403	Right-handed alpha
Helix 16	AB7	A	416	425	Right-handed alpha
Helix 17	AB8	A	563	590	Right-handed alpha
Helix 18	AB9	A	593	600	Right-handed alpha
Helix 19	AC1	A	601	615	Right-handed alpha
Helix 20	AC2	A	617	622	Right-handed alpha
Helix 21	AC3	A	626	635	Right-handed alpha
Helix 22	AC4	A	635	656	Right-handed alpha
Helix 23	AC5	A	656	665	Right-handed alpha
Helix 24	AC6	A	665	675	Right-handed alpha
Helix 25	AC7	A	676	701	Right-handed alpha
Helix 26	AC8	A	723	749	Right-handed alpha
Helix 27	AC9	A	757	781	Right-handed alpha
Helix 28	AD1	A	786	818	Right-handed alpha
Helix 29	AD2	A	819	822	Right-handed 310
Helix 30	AD3	A	823	829	Right-handed alpha
Helix 31	AD4	B	24	28	Right-handed 310
Helix 32	AD5	B	47	51	Right-handed 310
Helix 33	AD6	B	66	86	Right-handed alpha
Helix 34	AD7	B	105	118	Right-handed alpha
Helix 35	AD8	B	130	134	Right-handed 310
Helix 36	AD9	B	146	159	Right-handed alpha
Helix 37	AE1	B	171	176	Right-handed 310
Helix 38	AE2	B	189	204	Right-handed alpha
Helix 39	AE3	B	216	233	Right-handed alpha
Helix 40	AE4	B	249	266	Right-handed alpha
Helix 41	AE5	B	276	291	Right-handed alpha
Helix 42	AE6	B	308	312	Right-handed 310
Helix 43	AE7	B	333	345	Right-handed alpha
Helix 44	AE8	B	346	353	Right-handed 310
Helix 45	AE9	B	369	375	Right-handed 310
Helix 46	AF1	B	376	380	Right-handed 310
Helix 47	AF2	B	381	386	Right-handed alpha
Helix 48	AF3	B	394	415	Right-handed alpha
Helix 49	AF4	B	429	438	Right-handed alpha
Helix 50	AF5	B	488	492	Right-handed 310
Helix 51	AF6	B	573	598	Right-handed alpha
Helix 52	AF7	B	601	608	Right-handed alpha
Helix 53	AF8	B	608	625	Right-handed alpha
Helix 54	AF9	B	626	629	Right-handed 310
Helix 55	AG1	B	634	666	Right-handed alpha
Helix 56	AG2	B	670	682	Right-handed alpha
Helix 57	AG3	B	683	708	Right-handed alpha
Helix 58	AG4	B	731	738	Right-handed 310
Helix 59	AG5	B	739	754	Right-handed alpha
Helix 60	AG6	B	764	788	Right-handed alpha
Helix 61	AG7	B	791	793	Right-handed 310
Helix 62	AG8	B	794	815	Right-handed alpha
Helix 63	AG9	B	815	825	Right-handed alpha
Helix 64	AH1	B	826	829	Right-handed 310
Helix 65	AH2	B	830	835	Right-handed alpha

There are 17 sheets in PDB entry 9OPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	33	38	parallel
Strand 4	A	137	139	parallel
Strand 5	A	161	163	parallel
Strand 6	A	180	182	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	B	124	126	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	239	first strand
Strand 2	A	205	210	parallel
Strand 3	A	271	275	parallel
Strand 4	A	296	300	parallel
Strand 5	A	320	327	parallel
Strand 6	A	448	453	anti-parallel
Strand 7	A	462	469	anti-parallel
Strand 8	A	474	476	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	434	437	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	507	first strand
Strand 2	A	515	519	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	527	first strand
Strand 2	A	531	537	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	552	553	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	557	first strand
Strand 2	A	715	719	parallel
Strand 3	A	705	708	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	35	41	parallel
Strand 4	B	140	142	parallel
Strand 5	B	164	166	parallel
Strand 6	B	183	185	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	64	65	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	270	274	parallel
Strand 4	B	296	298	parallel
Strand 5	B	321	326	parallel
Strand 6	B	461	467	anti-parallel
Strand 7	B	474	481	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	447	449	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	B	527	528	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	523	524	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	534	first strand
Strand 2	B	544	545	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	551	first strand
Strand 2	B	560	561	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	565	first strand
Strand 2	B	722	728	parallel
Strand 3	B	711	715	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OPY