Analysis of interatomic Contacts of Structural Units in PDB entry:
9OPZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OPZ entry

There are 2 chains in PDB entry 9OPZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	GLN 555
B	LEU 23	PRO 561

There are 35 helices in PDB entry 9OPZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	62	Right-handed 310
Helix 2	AA2	A	65	85	Right-handed alpha
Helix 3	AA3	A	108	116	Right-handed alpha
Helix 4	AA4	A	143	155	Right-handed alpha
Helix 5	AA5	A	168	173	Right-handed 310
Helix 6	AA6	A	186	201	Right-handed alpha
Helix 7	AA7	A	213	229	Right-handed alpha
Helix 8	AA8	A	250	267	Right-handed alpha
Helix 9	AA9	A	277	291	Right-handed alpha
Helix 10	AB1	A	307	312	Right-handed alpha
Helix 11	AB2	A	313	318	Right-handed 310
Helix 12	AB3	A	334	340	Right-handed alpha
Helix 13	AB4	A	365	380	Right-handed alpha
Helix 14	AB5	A	384	403	Right-handed alpha
Helix 15	AB6	A	416	425	Right-handed alpha
Helix 16	AB7	B	24	28	Right-handed 310
Helix 17	AB8	B	47	52	Right-handed 310
Helix 18	AB9	B	66	86	Right-handed alpha
Helix 19	AC1	B	105	118	Right-handed alpha
Helix 20	AC2	B	146	160	Right-handed alpha
Helix 21	AC3	B	171	176	Right-handed 310
Helix 22	AC4	B	189	204	Right-handed alpha
Helix 23	AC5	B	216	234	Right-handed alpha
Helix 24	AC6	B	251	266	Right-handed alpha
Helix 25	AC7	B	276	291	Right-handed alpha
Helix 26	AC8	B	300	305	Right-handed alpha
Helix 27	AC9	B	306	311	Right-handed alpha
Helix 28	AD1	B	314	319	Right-handed 310
Helix 29	AD2	B	333	347	Right-handed alpha
Helix 30	AD3	B	347	352	Right-handed alpha
Helix 31	AD4	B	371	375	Right-handed 310
Helix 32	AD5	B	377	386	Right-handed alpha
Helix 33	AD6	B	393	415	Right-handed alpha
Helix 34	AD7	B	429	437	Right-handed alpha
Helix 35	AD8	B	489	492	Right-handed 310

There are 15 sheets in PDB entry 9OPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	94	100	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	135	140	parallel
Strand 5	A	161	163	parallel
Strand 6	A	180	182	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	B	124	126	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	240	first strand
Strand 2	A	205	211	parallel
Strand 3	A	271	275	parallel
Strand 4	A	296	300	parallel
Strand 5	A	320	327	parallel
Strand 6	A	448	453	anti-parallel
Strand 7	A	462	469	anti-parallel
Strand 8	A	474	476	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	434	437	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	507	first strand
Strand 2	A	515	519	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	525	first strand
Strand 2	A	536	537	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	552	553	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	35	41	parallel
Strand 4	B	140	142	parallel
Strand 5	B	164	166	parallel
Strand 6	B	183	185	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	64	65	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	208	214	parallel
Strand 3	B	242	243	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	208	214	parallel
Strand 3	B	270	274	parallel
Strand 4	B	296	297	parallel
Strand 5	B	320	326	parallel
Strand 6	B	461	467	anti-parallel
Strand 7	B	474	481	anti-parallel
Strand 8	B	485	487	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	447	449	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	B	527	528	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	523	524	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	535	first strand
Strand 2	B	543	545	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OPZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OPZ