Analysis of interatomic Contacts of Structural Units in PDB entry:
9OQ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OQ7 entry

There are 3 chains in PDB entry 9OQ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1	PHE 365
B	LEU 1	PHE 365
G	LEU 1	PHE 365

There are 9 helices in PDB entry 9OQ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed alpha
Helix 2	AA2	A	31	36	Right-handed alpha
Helix 3	AA3	A	128	131	Right-handed 310
Helix 4	AA4	B	7	12	Right-handed alpha
Helix 5	AA5	B	31	36	Right-handed alpha
Helix 6	AA6	B	128	131	Right-handed 310
Helix 7	AA7	G	7	12	Right-handed alpha
Helix 8	AA8	G	31	36	Right-handed alpha
Helix 9	AA9	G	128	131	Right-handed 310

There are 15 sheets in PDB entry 9OQ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	322	325	anti-parallel
Strand 3	A	259	273	anti-parallel
Strand 4	A	242	254	anti-parallel
Strand 5	A	182	193	anti-parallel
Strand 6	A	165	179	anti-parallel
Strand 7	A	110	126	anti-parallel
Strand 8	A	157	162	anti-parallel
Strand 9	A	197	203	anti-parallel
Strand 10	A	209	212	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	322	325	anti-parallel
Strand 3	A	259	273	anti-parallel
Strand 4	A	329	339	anti-parallel
Strand 5	A	343	351	anti-parallel
Strand 6	A	354	364	anti-parallel
Strand 7	A	37	50	anti-parallel
Strand 8	A	92	106	anti-parallel
Strand 9	A	110	126	anti-parallel
Strand 10	A	157	162	anti-parallel
Strand 11	A	197	203	anti-parallel
Strand 12	A	209	212	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	78	82	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	133	135	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	277	280	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	237	238	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	322	325	anti-parallel
Strand 3	B	259	273	anti-parallel
Strand 4	B	242	254	anti-parallel
Strand 5	B	182	193	anti-parallel
Strand 6	B	165	179	anti-parallel
Strand 7	B	110	126	anti-parallel
Strand 8	B	157	162	anti-parallel
Strand 9	B	197	203	anti-parallel
Strand 10	B	209	212	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	322	325	anti-parallel
Strand 3	B	259	273	anti-parallel
Strand 4	B	329	339	anti-parallel
Strand 5	B	343	351	anti-parallel
Strand 6	B	354	364	anti-parallel
Strand 7	B	37	50	anti-parallel
Strand 8	B	92	106	anti-parallel
Strand 9	B	110	126	anti-parallel
Strand 10	B	157	162	anti-parallel
Strand 11	B	197	203	anti-parallel
Strand 12	B	209	212	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	78	82	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	133	135	anti-parallel
Strand 3	B	314	320	anti-parallel
Strand 4	B	277	280	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	237	238	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	55	first strand
Strand 2	G	322	325	anti-parallel
Strand 3	G	259	273	anti-parallel
Strand 4	G	242	254	anti-parallel
Strand 5	G	182	193	anti-parallel
Strand 6	G	165	179	anti-parallel
Strand 7	G	110	126	anti-parallel
Strand 8	G	157	162	anti-parallel
Strand 9	G	197	203	anti-parallel
Strand 10	G	209	212	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	55	first strand
Strand 2	G	322	325	anti-parallel
Strand 3	G	259	273	anti-parallel
Strand 4	G	329	339	anti-parallel
Strand 5	G	343	351	anti-parallel
Strand 6	G	354	364	anti-parallel
Strand 7	G	37	50	anti-parallel
Strand 8	G	92	106	anti-parallel
Strand 9	G	110	126	anti-parallel
Strand 10	G	157	162	anti-parallel
Strand 11	G	197	203	anti-parallel
Strand 12	G	209	212	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	63	first strand
Strand 2	G	78	82	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	152	first strand
Strand 2	G	133	135	anti-parallel
Strand 3	G	314	320	anti-parallel
Strand 4	G	277	280	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	215	216	first strand
Strand 2	G	237	238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OQ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OQ7