Analysis of interatomic Contacts of Structural Units in PDB entry:
9OQD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OQD entry

There are 9 chains in PDB entry 9OQD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	GLU 223
B	GLN 1	PRO 219
C	LEU 1	PHE 365
D	ASP 6	GLU 223
E	GLN 1	PRO 219
F	LEU 1	PHE 365
G	ASP 6	GLU 223
H	GLN 1	PRO 219
I	LEU 1	PHE 365

There are 12 helices in PDB entry 9OQD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	192	197	Right-handed alpha
Helix 2	AA2	B	193	198	Right-handed alpha
Helix 3	AA3	C	7	12	Right-handed alpha
Helix 4	AA4	C	128	131	Right-handed 310
Helix 5	AA5	D	192	197	Right-handed alpha
Helix 6	AA6	E	193	198	Right-handed alpha
Helix 7	AA7	F	7	12	Right-handed alpha
Helix 8	AA8	F	128	131	Right-handed 310
Helix 9	AA9	G	192	197	Right-handed alpha
Helix 10	AB1	H	193	198	Right-handed alpha
Helix 11	AB2	I	7	12	Right-handed alpha
Helix 12	AB3	I	128	131	Right-handed 310

There are 39 sheets in PDB entry 9OQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	112	116	parallel
Strand 3	A	95	100	anti-parallel
Strand 4	A	43	48	anti-parallel
Strand 5	A	54	59	anti-parallel
Strand 6	A	63	64	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	29	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	72	77	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	142	149	anti-parallel
Strand 3	A	183	189	anti-parallel
Strand 4	A	172	173	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	218	220	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	143	150	anti-parallel
Strand 3	B	186	190	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	203	205	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	323	325	anti-parallel
Strand 3	C	259	273	anti-parallel
Strand 4	C	242	253	anti-parallel
Strand 5	C	182	193	anti-parallel
Strand 6	C	157	179	anti-parallel
Strand 7	C	197	203	anti-parallel
Strand 8	C	209	212	anti-parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	323	325	anti-parallel
Strand 3	C	259	273	anti-parallel
Strand 4	C	329	339	anti-parallel
Strand 5	C	343	351	anti-parallel
Strand 6	C	354	364	anti-parallel
Strand 7	C	37	50	anti-parallel
Strand 8	C	92	106	anti-parallel
Strand 9	C	110	126	anti-parallel
Strand 10	C	157	179	anti-parallel
Strand 11	C	197	203	anti-parallel
Strand 12	C	209	212	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	79	82	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	133	135	anti-parallel
Strand 3	C	314	317	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	215	218	anti-parallel
Strand 3	C	277	278	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	112	116	parallel
Strand 3	D	95	100	anti-parallel
Strand 4	D	43	48	anti-parallel
Strand 5	D	54	59	anti-parallel
Strand 6	D	63	64	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	29	first strand
Strand 2	D	80	85	anti-parallel
Strand 3	D	72	77	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	128	first strand
Strand 2	D	142	149	anti-parallel
Strand 3	D	183	189	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	160	first strand
Strand 2	D	201	207	anti-parallel
Strand 3	D	218	220	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	114	118	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	130	first strand
Strand 2	E	143	150	anti-parallel
Strand 3	E	186	190	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	160	first strand
Strand 2	E	203	205	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	323	325	anti-parallel
Strand 3	F	259	273	anti-parallel
Strand 4	F	242	253	anti-parallel
Strand 5	F	182	193	anti-parallel
Strand 6	F	157	179	anti-parallel
Strand 7	F	197	203	anti-parallel
Strand 8	F	209	212	anti-parallel

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There are 12 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	323	325	anti-parallel
Strand 3	F	259	273	anti-parallel
Strand 4	F	329	339	anti-parallel
Strand 5	F	343	351	anti-parallel
Strand 6	F	354	364	anti-parallel
Strand 7	F	37	50	anti-parallel
Strand 8	F	92	106	anti-parallel
Strand 9	F	110	126	anti-parallel
Strand 10	F	157	179	anti-parallel
Strand 11	F	197	203	anti-parallel
Strand 12	F	209	212	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	79	82	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	152	first strand
Strand 2	F	133	135	anti-parallel
Strand 3	F	314	317	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	238	first strand
Strand 2	F	215	218	anti-parallel
Strand 3	F	277	278	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	18	first strand
Strand 2	G	112	116	parallel
Strand 3	G	95	100	anti-parallel
Strand 4	G	43	48	anti-parallel
Strand 5	G	54	59	anti-parallel
Strand 6	G	63	64	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	29	first strand
Strand 2	G	80	85	anti-parallel
Strand 3	G	72	77	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	124	128	first strand
Strand 2	G	142	149	anti-parallel
Strand 3	G	183	189	anti-parallel
Strand 4	G	172	173	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	160	first strand
Strand 2	G	201	207	anti-parallel
Strand 3	G	218	220	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	130	first strand
Strand 2	H	143	150	anti-parallel
Strand 3	H	186	190	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	160	first strand
Strand 2	H	203	205	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	54	first strand
Strand 2	I	323	325	anti-parallel
Strand 3	I	259	273	anti-parallel
Strand 4	I	242	253	anti-parallel
Strand 5	I	182	193	anti-parallel
Strand 6	I	157	179	anti-parallel
Strand 7	I	197	203	anti-parallel
Strand 8	I	209	212	anti-parallel

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There are 12 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	54	first strand
Strand 2	I	323	325	anti-parallel
Strand 3	I	259	273	anti-parallel
Strand 4	I	329	339	anti-parallel
Strand 5	I	343	351	anti-parallel
Strand 6	I	354	364	anti-parallel
Strand 7	I	37	50	anti-parallel
Strand 8	I	92	106	anti-parallel
Strand 9	I	110	126	anti-parallel
Strand 10	I	157	179	anti-parallel
Strand 11	I	197	203	anti-parallel
Strand 12	I	209	212	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	62	first strand
Strand 2	I	79	82	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	152	first strand
Strand 2	I	133	135	anti-parallel
Strand 3	I	314	317	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	237	238	first strand
Strand 2	I	215	218	anti-parallel
Strand 3	I	277	278	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OQD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OQD