Analysis of interatomic Contacts of Structural Units in PDB entry:
9OQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OQY entry

There is 1 chain in PDB entry 9OQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9OQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 10Right-handed alpha
Helix 2
AA2
A
11 29Right-handed alpha
Helix 3
AA3
A
37 50Right-handed alpha
Helix 4
AA4
A
61 77Right-handed alpha
Helix 5
AA5
A
77 113Right-handed alpha
Helix 6
AA6
A
117 129Right-handed alpha
Helix 7
AA7
A
133 145Right-handed alpha
Helix 8
AA8
A
148 180Right-handed alpha
Helix 9
AA9
A
180 186Right-handed alpha
Helix 10
AB1
A
189 200Right-handed alpha
Helix 11
AB2
A
228 236Right-handed alpha
Helix 12
AB3
A
266 278Right-handed alpha
Helix 13
AB4
A
302 311Right-handed alpha
Helix 14
AB5
A
325 330Right-handed 310
Helix 15
AB6
A
343 353Right-handed alpha
Helix 16
AB7
A
364 380Right-handed alpha
Helix 17
AB8
A
392 412Right-handed alpha
Helix 18
AB9
A
419 442Right-handed alpha
Helix 19
AC1
A
442 452Right-handed alpha
Helix 20
AC2
A
454 479Right-handed alpha
Helix 21
AC3
A
483 496Right-handed alpha
Helix 22
AC4
A
497 509Right-handed alpha
Helix 23
AC5
A
512 542Right-handed alpha
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There are 3 sheets in PDB entry 9OQY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 245first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
212 217anti-parallel
Strand 4
A
280 282anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 317first strand
Strand 2
A
336 342anti-parallel
Strand 3
A
289 296anti-parallel
Strand 4
A
354 356anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
A
388 391anti-parallel
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