Analysis of interatomic Contacts of Structural Units in PDB entry:
9ORE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ORE entry

There are 5 chains in PDB entry 9ORE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 20	ASN 468
B	LEU 19	ASN 468
C	LEU 19	ASN 468
H	VAL 2	VAL 111
L	ASP 1	LYS 107

There are 48 helices in PDB entry 9ORE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	82	Right-handed alpha
Helix 2	AA2	A	104	110	Right-handed alpha
Helix 3	AA3	A	111	130	Right-handed alpha
Helix 4	AA4	A	130	141	Right-handed alpha
Helix 5	AA5	A	163	171	Right-handed alpha
Helix 6	AA6	A	187	197	Right-handed alpha
Helix 7	AA7	A	197	210	Right-handed alpha
Helix 8	AA8	A	223	233	Right-handed alpha
Helix 9	AA9	A	237	247	Right-handed alpha
Helix 10	AB1	A	247	254	Right-handed alpha
Helix 11	AB2	A	336	340	Right-handed 310
Helix 12	AB3	A	344	348	Right-handed 310
Helix 13	AB4	A	441	445	Right-handed 310
Helix 14	AB5	A	460	467	Right-handed alpha
Helix 15	AB6	B	54	58	Right-handed 310
Helix 16	AB7	B	65	82	Right-handed alpha
Helix 17	AB8	B	104	110	Right-handed alpha
Helix 18	AB9	B	111	129	Right-handed alpha
Helix 19	AC1	B	130	141	Right-handed alpha
Helix 20	AC2	B	163	172	Right-handed alpha
Helix 21	AC3	B	172	177	Right-handed alpha
Helix 22	AC4	B	187	197	Right-handed alpha
Helix 23	AC5	B	197	211	Right-handed alpha
Helix 24	AC6	B	223	232	Right-handed alpha
Helix 25	AC7	B	237	247	Right-handed alpha
Helix 26	AC8	B	248	253	Right-handed alpha
Helix 27	AC9	B	337	340	Right-handed 310
Helix 28	AD1	B	344	352	Right-handed 310
Helix 29	AD2	B	441	445	Right-handed 310
Helix 30	AD3	B	460	467	Right-handed alpha
Helix 31	AD4	C	53	58	Right-handed 310
Helix 32	AD5	C	65	82	Right-handed alpha
Helix 33	AD6	C	104	109	Right-handed alpha
Helix 34	AD7	C	111	130	Right-handed alpha
Helix 35	AD8	C	130	142	Right-handed alpha
Helix 36	AD9	C	163	172	Right-handed alpha
Helix 37	AE1	C	172	177	Right-handed alpha
Helix 38	AE2	C	187	211	Right-handed alpha
Helix 39	AE3	C	223	232	Right-handed alpha
Helix 40	AE4	C	237	246	Right-handed alpha
Helix 41	AE5	C	247	254	Right-handed alpha
Helix 42	AE6	C	322	324	Right-handed 310
Helix 43	AE7	C	338	340	Right-handed 310
Helix 44	AE8	C	345	350	Right-handed alpha
Helix 45	AE9	C	441	446	Right-handed 310
Helix 46	AF1	C	460	467	Right-handed alpha
Helix 47	AF2	H	28	32	Right-handed 310
Helix 48	AF3	H	83	87	Right-handed 310

There are 25 sheets in PDB entry 9ORE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	332	333	anti-parallel
Strand 3	A	29	39	parallel
Strand 4	A	278	288	anti-parallel
Strand 5	A	308	313	anti-parallel
Strand 6	A	316	320	anti-parallel
Strand 7	A	341	343	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	332	333	anti-parallel
Strand 3	A	29	39	parallel
Strand 4	A	21	24	anti-parallel
Strand 5	A	434	437	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	44	51	parallel
Strand 4	A	266	273	anti-parallel
Strand 5	A	257	263	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	298	304	anti-parallel
Strand 3	A	362	366	anti-parallel
Strand 4	A	458	459	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	379	383	anti-parallel
Strand 3	A	408	411	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	390	394	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	423	426	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	316	320	anti-parallel
Strand 3	B	308	313	anti-parallel
Strand 4	B	285	287	anti-parallel
Strand 5	B	29	33	anti-parallel
Strand 6	B	20	24	anti-parallel
Strand 7	B	433	437	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	332	335	parallel
Strand 3	B	326	329	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	44	51	parallel
Strand 4	B	266	273	anti-parallel
Strand 5	B	257	263	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	304	first strand
Strand 2	B	362	366	anti-parallel
Strand 3	B	458	459	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	376	first strand
Strand 2	B	379	384	anti-parallel
Strand 3	B	406	411	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	390	394	anti-parallel
Strand 3	B	417	420	anti-parallel
Strand 4	B	424	426	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	20	24	anti-parallel
Strand 3	C	433	437	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	283	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	332	336	parallel
Strand 4	C	326	329	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	156	160	anti-parallel
Strand 3	C	44	50	parallel
Strand 4	C	266	273	anti-parallel
Strand 5	C	256	263	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	295	first strand
Strand 2	C	298	304	anti-parallel
Strand 3	C	362	366	anti-parallel
Strand 4	C	458	459	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	313	first strand
Strand 2	C	316	320	anti-parallel
Strand 3	C	341	343	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	376	first strand
Strand 2	C	379	382	anti-parallel
Strand 3	C	408	411	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	391	394	anti-parallel
Strand 3	C	417	419	anti-parallel
Strand 4	C	424	426	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	77	80	anti-parallel
Strand 4	H	69	72	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	51	first strand
Strand 2	H	34	35	anti-parallel
Strand 3	H	93	94	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	88	90	anti-parallel
Strand 3	H	107	109	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	105	106	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	24	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	46	first strand
Strand 2	L	35	38	anti-parallel
Strand 3	L	85	88	anti-parallel
Strand 4	L	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ORE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ORE