Analysis of interatomic Contacts of Structural Units in PDB entry:
9ORP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ORP entry

There are 16 chains in PDB entry 9ORP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET -12	ASN 121
B	MET -12	ASN 121
C	MET -12	ASN 121
D	MET -12	ASN 121
E	MET -12	ASN 121
F	MET -12	ASN 121
G	MET -12	ASN 121
H	MET -12	ASN 121
I	MET -12	ASN 121
J	MET -12	ASN 121
K	MET -12	ASN 121
L	MET -12	ASN 121
M	MET -12	ASN 121
N	MET -12	ASN 121
O	MET -12	ASN 121
P	MET -12	ASN 121

There are 48 helices in PDB entry 9ORP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-11	23	Right-handed alpha
Helix 2	AA2	A	29	49	Right-handed alpha
Helix 3	AA3	A	50	69	Right-handed alpha
Helix 4	AA4	B	-11	23	Right-handed alpha
Helix 5	AA5	B	29	49	Right-handed alpha
Helix 6	AA6	B	50	69	Right-handed alpha
Helix 7	AA7	C	-11	23	Right-handed alpha
Helix 8	AA8	C	29	49	Right-handed alpha
Helix 9	AA9	C	50	69	Right-handed alpha
Helix 10	AB1	D	-11	23	Right-handed alpha
Helix 11	AB2	D	29	49	Right-handed alpha
Helix 12	AB3	D	50	69	Right-handed alpha
Helix 13	AB4	E	-11	23	Right-handed alpha
Helix 14	AB5	E	29	49	Right-handed alpha
Helix 15	AB6	E	50	69	Right-handed alpha
Helix 16	AB7	F	-11	23	Right-handed alpha
Helix 17	AB8	F	29	49	Right-handed alpha
Helix 18	AB9	F	50	69	Right-handed alpha
Helix 19	AC1	G	-11	23	Right-handed alpha
Helix 20	AC2	G	29	49	Right-handed alpha
Helix 21	AC3	G	50	69	Right-handed alpha
Helix 22	AC4	H	-11	23	Right-handed alpha
Helix 23	AC5	H	29	49	Right-handed alpha
Helix 24	AC6	H	50	69	Right-handed alpha
Helix 25	AC7	I	-11	23	Right-handed alpha
Helix 26	AC8	I	29	49	Right-handed alpha
Helix 27	AC9	I	50	69	Right-handed alpha
Helix 28	AD1	J	-11	23	Right-handed alpha
Helix 29	AD2	J	29	49	Right-handed alpha
Helix 30	AD3	J	50	69	Right-handed alpha
Helix 31	AD4	K	-11	23	Right-handed alpha
Helix 32	AD5	K	29	49	Right-handed alpha
Helix 33	AD6	K	50	69	Right-handed alpha
Helix 34	AD7	L	-11	23	Right-handed alpha
Helix 35	AD8	L	29	49	Right-handed alpha
Helix 36	AD9	L	50	69	Right-handed alpha
Helix 37	AE1	M	-11	23	Right-handed alpha
Helix 38	AE2	M	29	49	Right-handed alpha
Helix 39	AE3	M	50	69	Right-handed alpha
Helix 40	AE4	N	-11	23	Right-handed alpha
Helix 41	AE5	N	29	49	Right-handed alpha
Helix 42	AE6	N	50	69	Right-handed alpha
Helix 43	AE7	O	-11	23	Right-handed alpha
Helix 44	AE8	O	29	49	Right-handed alpha
Helix 45	AE9	O	50	69	Right-handed alpha
Helix 46	AF1	P	-11	23	Right-handed alpha
Helix 47	AF2	P	29	49	Right-handed alpha
Helix 48	AF3	P	50	69	Right-handed alpha

There are 7 sheets in PDB entry 9ORP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	83	first strand
Strand 2	A	112	120	anti-parallel
Strand 3	H	73	83	anti-parallel
Strand 4	H	112	120	anti-parallel
Strand 5	G	73	83	anti-parallel
Strand 6	G	112	120	anti-parallel
Strand 7	F	73	83	anti-parallel
Strand 8	F	112	120	anti-parallel
Strand 9	E	73	83	anti-parallel
Strand 10	E	112	120	anti-parallel
Strand 11	D	73	83	anti-parallel
Strand 12	D	112	120	anti-parallel
Strand 13	C	73	83	anti-parallel
Strand 14	C	112	120	anti-parallel
Strand 15	B	73	83	anti-parallel
Strand 16	B	112	120	anti-parallel
Strand 17	A	73	83	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	104	105	anti-parallel
Strand 3	H	88	92	anti-parallel
Strand 4	H	104	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	104	105	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	104	105	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	88	92	anti-parallel
Strand 3	E	104	105	anti-parallel
Strand 4	E	88	92	anti-parallel
Strand 5	F	104	105	anti-parallel
Strand 6	F	88	92	anti-parallel
Strand 7	G	104	105	anti-parallel
Strand 8	G	88	89	anti-parallel

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There are 17 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	83	first strand
Strand 2	I	112	120	anti-parallel
Strand 3	P	73	83	anti-parallel
Strand 4	P	112	120	anti-parallel
Strand 5	O	73	83	anti-parallel
Strand 6	O	112	120	anti-parallel
Strand 7	N	73	83	anti-parallel
Strand 8	N	112	120	anti-parallel
Strand 9	M	73	83	anti-parallel
Strand 10	M	112	120	anti-parallel
Strand 11	L	73	83	anti-parallel
Strand 12	L	112	120	anti-parallel
Strand 13	K	73	83	anti-parallel
Strand 14	K	112	120	anti-parallel
Strand 15	J	73	83	anti-parallel
Strand 16	J	112	120	anti-parallel
Strand 17	I	73	83	anti-parallel

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There are 16 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	88	89	first strand
Strand 2	K	104	105	anti-parallel
Strand 3	J	88	92	anti-parallel
Strand 4	J	104	105	anti-parallel
Strand 5	I	88	92	anti-parallel
Strand 6	I	104	105	anti-parallel
Strand 7	P	88	92	anti-parallel
Strand 8	P	104	105	anti-parallel
Strand 9	O	88	92	anti-parallel
Strand 10	O	104	105	anti-parallel
Strand 11	N	88	92	anti-parallel
Strand 12	N	104	105	anti-parallel
Strand 13	M	88	92	anti-parallel
Strand 14	M	104	105	anti-parallel
Strand 15	L	88	92	anti-parallel
Strand 16	L	104	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ORP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ORP