Analysis of interatomic Contacts of Structural Units in PDB entry:
9OSX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OSX entry

There are 3 chains in PDB entry 9OSX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ILE 117
B
 ALA 20LYS 246
C
 ALA 23CYS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 9OSX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 63Right-handed 310
Helix 2
AA2
B
47 51Right-handed 310
Helix 3
AA3
B
81 84Right-handed 310
Helix 4
AA4
B
106 110Right-handed 310
Helix 5
AA5
B
125 130Right-handed alpha
Helix 6
AA6
B
188 190Right-handed 310
Helix 7
AA7
B
219 221Right-handed 310
Helix 8
AA8
B
234 236Right-handed 310
Helix 9
AA9
C
96 100Right-handed 310
Helix 10
AB1
C
138 143Right-handed alpha
Helix 11
AB2
C
200 204Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 9OSX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 22first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
52 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 76first strand
Strand 2
A
79 86anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
111 116anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
36 44anti-parallel
Strand 3
B
97 103anti-parallel
Strand 4
B
87 92anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
139 143parallel
Strand 3
B
111 118anti-parallel
Strand 4
B
53 58anti-parallel
Strand 5
B
64 70anti-parallel
Strand 6
B
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
139 143parallel
Strand 3
B
111 118anti-parallel
Strand 4
B
132 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
167 177anti-parallel
Strand 3
B
208 217anti-parallel
Strand 4
B
195 197anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
167 177anti-parallel
Strand 3
B
208 217anti-parallel
Strand 4
B
201 202anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 186first strand
Strand 2
B
226 232anti-parallel
Strand 3
B
237 243anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
119 123parallel
Strand 3
C
101 108anti-parallel
Strand 4
C
50 54anti-parallel
Strand 5
C
62 65anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
119 123parallel
Strand 3
C
101 108anti-parallel
Strand 4
C
113 115anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 43first strand
Strand 2
C
87 92anti-parallel
Strand 3
C
79 83anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 135first strand
Strand 2
C
146 156anti-parallel
Strand 3
C
190 199anti-parallel
Strand 4
C
176 180anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 167first strand
Strand 2
C
208 214anti-parallel
Strand 3
C
222 227anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il