Analysis of interatomic Contacts of Structural Units in PDB entry:
9OT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OT1 entry

There are 19 chains in PDB entry 9OT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
PRO 330LEU 480
A
PRO 330LEU 480
C
LEU 370GLY 712
D
ILE 371LEU 696
E
GLY 398LEU 574
F
GLY 398LEU 574
G
GLY 398LEU 574
H
GLY 398LEU 574
I
GLY 398LEU 574
J
GLY 398LEU 574
K
GLY 398LEU 574
L
GLY 398LEU 574
M
GLY 398LEU 574
N
GLY 398LEU 574
O
GLY 398LEU 574
P
GLY 398LEU 574
Q
ASN 404LEU 574
R
GLU 407LEU 574
S
LEU 409LEU 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are191 helices in PDB entry 9OT1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
346 358Right-handed alpha
Helix 2
AA2
B
369 377Right-handed alpha
Helix 3
AA3
B
377 389Right-handed alpha
Helix 4
AA4
B
422 437Right-handed alpha
Helix 5
AA5
B
439 441Right-handed 310
Helix 6
AA6
B
454 461Right-handed alpha
Helix 7
AA7
B
471 480Right-handed alpha
Helix 8
AA8
A
344 359Right-handed alpha
Helix 9
AA9
A
365 377Right-handed alpha
Helix 10
AB1
A
377 389Right-handed alpha
Helix 11
AB2
A
422 437Right-handed alpha
Helix 12
AB3
A
439 441Right-handed 310
Helix 13
AB4
A
456 461Right-handed alpha
Helix 14
AB5
A
467 480Right-handed alpha
Helix 15
AB6
C
388 405Right-handed alpha
Helix 16
AB7
C
416 424Right-handed alpha
Helix 17
AB8
C
424 440Right-handed alpha
Helix 18
AB9
C
448 459Right-handed alpha
Helix 19
AC1
C
467 473Right-handed alpha
Helix 20
AC2
C
477 487Right-handed alpha
Helix 21
AC3
C
488 497Right-handed 310
Helix 22
AC4
C
509 513Right-handed 310
Helix 23
AC5
C
514 519Right-handed alpha
Helix 24
AC6
C
528 538Right-handed alpha
Helix 25
AC7
C
554 561Right-handed alpha
Helix 26
AC8
C
561 581Right-handed alpha
Helix 27
AC9
C
583 589Right-handed alpha
Helix 28
AD1
C
640 644Right-handed 310
Helix 29
AD2
C
672 676Right-handed 310
Helix 30
AD3
D
388 405Right-handed alpha
Helix 31
AD4
D
412 415Right-handed 310
Helix 32
AD5
D
416 424Right-handed alpha
Helix 33
AD6
D
424 440Right-handed alpha
Helix 34
AD7
D
448 460Right-handed alpha
Helix 35
AD8
D
469 473Right-handed 310
Helix 36
AD9
D
477 487Right-handed alpha
Helix 37
AE1
D
488 492Right-handed 310
Helix 38
AE2
D
494 497Right-handed 310
Helix 39
AE3
D
509 513Right-handed 310
Helix 40
AE4
D
514 520Right-handed 310
Helix 41
AE5
D
528 538Right-handed alpha
Helix 42
AE6
D
554 561Right-handed alpha
Helix 43
AE7
D
561 581Right-handed alpha
Helix 44
AE8
D
583 589Right-handed alpha
Helix 45
AE9
D
626 630Right-handed 310
Helix 46
AF1
E
406 409Right-handed 310
Helix 47
AF2
E
417 419Right-handed 310
Helix 48
AF3
E
420 434Right-handed alpha
Helix 49
AF4
E
444 451Right-handed alpha
Helix 50
AF5
E
451 462Right-handed alpha
Helix 51
AF6
E
472 480Right-handed alpha
Helix 52
AF7
E
482 488Right-handed 310
Helix 53
AF8
E
489 509Right-handed alpha
Helix 54
AF9
E
525 529Right-handed 310
Helix 55
AG1
E
530 534Right-handed 310
Helix 56
AG2
E
544 553Right-handed alpha
Helix 57
AG3
F
406 409Right-handed 310
Helix 58
AG4
F
417 419Right-handed 310
Helix 59
AG5
F
420 434Right-handed alpha
Helix 60
AG6
F
440 449Right-handed alpha
Helix 61
AG7
F
451 462Right-handed alpha
Helix 62
AG8
F
472 482Right-handed alpha
Helix 63
AG9
F
483 485Right-handed 310
Helix 64
AH1
F
489 509Right-handed alpha
Helix 65
AH2
F
525 529Right-handed 310
Helix 66
AH3
F
530 536Right-handed 310
Helix 67
AH4
F
544 554Right-handed alpha
Helix 68
AH5
G
406 409Right-handed 310
Helix 69
AH6
G
417 419Right-handed 310
Helix 70
AH7
G
420 434Right-handed alpha
Helix 71
AH8
G
444 451Right-handed alpha
Helix 72
AH9
G
451 462Right-handed alpha
Helix 73
AI1
G
472 482Right-handed alpha
Helix 74
AI2
G
489 509Right-handed alpha
Helix 75
AI3
G
525 529Right-handed 310
Helix 76
AI4
G
530 536Right-handed 310
Helix 77
AI5
G
544 554Right-handed alpha
Helix 78
AI6
H
406 409Right-handed 310
Helix 79
AI7
H
417 419Right-handed 310
Helix 80
AI8
H
420 434Right-handed alpha
Helix 81
AI9
H
440 449Right-handed alpha
Helix 82
AJ1
H
451 462Right-handed alpha
Helix 83
AJ2
H
472 482Right-handed alpha
Helix 84
AJ3
H
489 509Right-handed alpha
Helix 85
AJ4
H
525 529Right-handed 310
Helix 86
AJ5
H
530 536Right-handed 310
Helix 87
AJ6
H
544 554Right-handed alpha
Helix 88
AJ7
I
406 409Right-handed 310
Helix 89
AJ8
I
417 419Right-handed 310
Helix 90
AJ9
I
420 434Right-handed alpha
Helix 91
AK1
I
444 451Right-handed alpha
Helix 92
AK2
I
451 462Right-handed alpha
Helix 93
AK3
I
472 486Right-handed alpha
Helix 94
AK4
I
489 509Right-handed alpha
Helix 95
AK5
I
525 529Right-handed 310
Helix 96
AK6
I
530 536Right-handed 310
Helix 97
AK7
I
544 554Right-handed alpha
Helix 98
AK8
J
406 409Right-handed 310
Helix 99
AK9
J
417 419Right-handed 310
Helix 100
AL1
J
420 434Right-handed alpha
Helix 101
AL2
J
444 451Right-handed alpha
Helix 102
AL3
J
451 462Right-handed alpha
Helix 103
AL4
J
472 486Right-handed alpha
Helix 104
AL5
J
489 509Right-handed alpha
Helix 105
AL6
J
525 529Right-handed 310
Helix 106
AL7
J
530 536Right-handed 310
Helix 107
AL8
J
544 554Right-handed alpha
Helix 108
AL9
K
406 409Right-handed 310
Helix 109
AM1
K
417 419Right-handed 310
Helix 110
AM2
K
420 434Right-handed alpha
Helix 111
AM3
K
444 451Right-handed alpha
Helix 112
AM4
K
451 462Right-handed alpha
Helix 113
AM5
K
472 482Right-handed alpha
Helix 114
AM6
K
489 509Right-handed alpha
Helix 115
AM7
K
525 529Right-handed 310
Helix 116
AM8
K
530 536Right-handed 310
Helix 117
AM9
K
544 554Right-handed alpha
Helix 118
AN1
L
406 409Right-handed 310
Helix 119
AN2
L
417 419Right-handed 310
Helix 120
AN3
L
420 434Right-handed alpha
Helix 121
AN4
L
444 449Right-handed alpha
Helix 122
AN5
L
451 462Right-handed alpha
Helix 123
AN6
L
472 482Right-handed alpha
Helix 124
AN7
L
489 509Right-handed alpha
Helix 125
AN8
L
525 529Right-handed 310
Helix 126
AN9
L
530 536Right-handed 310
Helix 127
AO1
L
544 554Right-handed alpha
Helix 128
AO2
M
406 409Right-handed 310
Helix 129
AO3
M
417 419Right-handed 310
Helix 130
AO4
M
420 434Right-handed alpha
Helix 131
AO5
M
444 451Right-handed alpha
Helix 132
AO6
M
451 462Right-handed alpha
Helix 133
AO7
M
472 486Right-handed alpha
Helix 134
AO8
M
489 509Right-handed alpha
Helix 135
AO9
M
525 529Right-handed 310
Helix 136
AP1
M
530 536Right-handed 310
Helix 137
AP2
M
544 554Right-handed alpha
Helix 138
AP3
N
406 409Right-handed 310
Helix 139
AP4
N
417 419Right-handed 310
Helix 140
AP5
N
420 434Right-handed alpha
Helix 141
AP6
N
444 451Right-handed alpha
Helix 142
AP7
N
451 462Right-handed alpha
Helix 143
AP8
N
472 482Right-handed alpha
Helix 144
AP9
N
489 509Right-handed alpha
Helix 145
AQ1
N
525 529Right-handed 310
Helix 146
AQ2
N
530 536Right-handed 310
Helix 147
AQ3
N
544 554Right-handed alpha
Helix 148
AQ4
O
406 409Right-handed 310
Helix 149
AQ5
O
417 419Right-handed 310
Helix 150
AQ6
O
420 434Right-handed alpha
Helix 151
AQ7
O
444 451Right-handed alpha
Helix 152
AQ8
O
451 462Right-handed alpha
Helix 153
AQ9
O
472 486Right-handed alpha
Helix 154
AR1
O
489 509Right-handed alpha
Helix 155
AR2
O
525 529Right-handed 310
Helix 156
AR3
O
530 536Right-handed 310
Helix 157
AR4
O
544 554Right-handed alpha
Helix 158
AR5
P
406 409Right-handed 310
Helix 159
AR6
P
417 419Right-handed 310
Helix 160
AR7
P
420 434Right-handed alpha
Helix 161
AR8
P
444 451Right-handed alpha
Helix 162
AR9
P
451 462Right-handed alpha
Helix 163
AS1
P
472 486Right-handed alpha
Helix 164
AS2
P
489 509Right-handed alpha
Helix 165
AS3
P
525 529Right-handed 310
Helix 166
AS4
P
530 536Right-handed 310
Helix 167
AS5
P
544 554Right-handed alpha
Helix 168
AS6
Q
417 434Right-handed alpha
Helix 169
AS7
Q
444 451Right-handed alpha
Helix 170
AS8
Q
451 462Right-handed alpha
Helix 171
AS9
Q
472 482Right-handed alpha
Helix 172
AT1
Q
483 487Right-handed 310
Helix 173
AT2
Q
489 509Right-handed alpha
Helix 174
AT3
Q
530 536Right-handed 310
Helix 175
AT4
Q
544 554Right-handed alpha
Helix 176
AT5
R
407 409Right-handed 310
Helix 177
AT6
R
417 419Right-handed 310
Helix 178
AT7
R
420 434Right-handed alpha
Helix 179
AT8
R
440 449Right-handed alpha
Helix 180
AT9
R
451 462Right-handed alpha
Helix 181
AU1
R
472 481Right-handed alpha
Helix 182
AU2
R
490 509Right-handed alpha
Helix 183
AU3
R
525 529Right-handed 310
Helix 184
AU4
R
530 536Right-handed 310
Helix 185
AU5
R
544 554Right-handed alpha
Helix 186
AU6
S
417 435Right-handed alpha
Helix 187
AU7
S
456 462Right-handed alpha
Helix 188
AU8
S
472 481Right-handed alpha
Helix 189
AU9
S
492 509Right-handed alpha
Helix 190
AV1
S
530 535Right-handed alpha
Helix 191
AV2
S
544 553Right-handed alpha
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There are 34 sheets in PDB entry 9OT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
362 364first strand
Strand 2
B
333 337parallel
Strand 3
B
391 395parallel
Strand 4
B
443 447parallel
Strand 5
B
465 467parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 364first strand
Strand 2
A
332 337parallel
Strand 3
A
391 395parallel
Strand 4
A
443 446parallel
Strand 5
A
465 466parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
409 411first strand
Strand 2
C
379 384parallel
Strand 3
C
443 446parallel
Strand 4
C
499 504parallel
Strand 5
C
522 525parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
542 543first strand
Strand 2
C
546 550anti-parallel
Strand 3
E
569 573anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
399 401first strand
Strand 2
G
569 573anti-parallel
Strand 3
C
618 622anti-parallel
Strand 4
E
558 559anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
399 401first strand
Strand 2
I
568 573anti-parallel
Strand 3
C
633 638anti-parallel
Strand 4
G
558 559anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
399 401first strand
Strand 2
K
568 573anti-parallel
Strand 3
C
648 653anti-parallel
Strand 4
I
558 559anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
667 670first strand
Strand 2
M
568 571anti-parallel
Strand 3
K
399 401anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
399 401first strand
Strand 2
O
569 573anti-parallel
Strand 3
C
679 683anti-parallel
Strand 4
M
558 559anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
399 401first strand
Strand 2
Q
569 573anti-parallel
Strand 3
C
692 696anti-parallel
Strand 4
O
558 559anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
558 559first strand
Strand 2
C
705 706anti-parallel
Strand 3
S
572 573anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
408 411first strand
Strand 2
D
378 384parallel
Strand 3
D
442 446parallel
Strand 4
D
499 503parallel
Strand 5
D
522 524parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
542 543first strand
Strand 2
D
546 550anti-parallel
Strand 3
F
569 573anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
399 401first strand
Strand 2
H
569 573anti-parallel
Strand 3
D
618 622anti-parallel
Strand 4
F
558 559anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
399 402first strand
Strand 2
J
568 573anti-parallel
Strand 3
D
633 637anti-parallel
Strand 4
H
558 559anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
399 401first strand
Strand 2
L
568 573anti-parallel
Strand 3
D
648 653anti-parallel
Strand 4
J
558 559anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
399 401first strand
Strand 2
N
568 573anti-parallel
Strand 3
D
665 670anti-parallel
Strand 4
L
558 559anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
399 401first strand
Strand 2
P
569 573anti-parallel
Strand 3
D
679 683anti-parallel
Strand 4
N
558 559anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
400 401first strand
Strand 2
R
569 573anti-parallel
Strand 3
D
692 694anti-parallel
Strand 4
P
558 559anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
437 439first strand
Strand 2
E
411 415parallel
Strand 3
E
466 471parallel
Strand 4
E
516 520parallel
Strand 5
E
539 540parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
437 439first strand
Strand 2
F
411 415parallel
Strand 3
F
466 471parallel
Strand 4
F
516 520parallel
Strand 5
F
539 540parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
437 439first strand
Strand 2
G
411 415parallel
Strand 3
G
466 471parallel
Strand 4
G
516 520parallel
Strand 5
G
539 540parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
437 439first strand
Strand 2
H
411 415parallel
Strand 3
H
466 471parallel
Strand 4
H
516 520parallel
Strand 5
H
539 540parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
437 439first strand
Strand 2
I
411 415parallel
Strand 3
I
466 471parallel
Strand 4
I
516 520parallel
Strand 5
I
539 540parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
437 439first strand
Strand 2
J
411 415parallel
Strand 3
J
466 471parallel
Strand 4
J
516 520parallel
Strand 5
J
539 540parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
437 439first strand
Strand 2
K
411 415parallel
Strand 3
K
466 471parallel
Strand 4
K
516 520parallel
Strand 5
K
539 540parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
437 439first strand
Strand 2
L
411 415parallel
Strand 3
L
466 471parallel
Strand 4
L
516 520parallel
Strand 5
L
539 540parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
437 439first strand
Strand 2
M
411 415parallel
Strand 3
M
466 471parallel
Strand 4
M
516 520parallel
Strand 5
M
539 540parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
437 439first strand
Strand 2
N
411 415parallel
Strand 3
N
466 471parallel
Strand 4
N
516 520parallel
Strand 5
N
539 540parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
437 439first strand
Strand 2
O
411 415parallel
Strand 3
O
466 471parallel
Strand 4
O
516 520parallel
Strand 5
O
539 540parallel
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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
437 439first strand
Strand 2
P
411 415parallel
Strand 3
P
466 471parallel
Strand 4
P
516 520parallel
Strand 5
P
539 540parallel
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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
437 439first strand
Strand 2
Q
411 415parallel
Strand 3
Q
466 471parallel
Strand 4
Q
516 520parallel
Strand 5
Q
539 540parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
437 439first strand
Strand 2
R
411 415parallel
Strand 3
R
466 471parallel
Strand 4
R
516 520parallel
Strand 5
R
539 540parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
437 439first strand
Strand 2
S
411 415parallel
Strand 3
S
466 471parallel
Strand 4
S
516 520parallel
Strand 5
S
539 540parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il