Analysis of interatomic Contacts of Structural Units in PDB entry:
9OTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OTL entry

There are 4 chains in PDB entry 9OTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2TYR 325
B
 MET 2TYR 325
C
 MET 2TYR 325
D
 MET 2GLN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 9OTL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
16 19Right-handed 310
Helix 3
AA3
A
30 36Right-handed alpha
Helix 4
AA4
A
36 47Right-handed alpha
Helix 5
AA5
A
57 63Right-handed alpha
Helix 6
AA6
A
83 96Right-handed alpha
Helix 7
AA7
A
109 115Right-handed 310
Helix 8
AA8
A
128 131Right-handed 310
Helix 9
AA9
A
132 147Right-handed alpha
Helix 10
AB1
A
153 175Right-handed alpha
Helix 11
AB2
A
175 187Right-handed alpha
Helix 12
AB3
A
197 199Right-handed 310
Helix 13
AB4
A
200 216Right-handed alpha
Helix 14
AB5
A
226 228Right-handed 310
Helix 15
AB6
A
251 265Right-handed alpha
Helix 16
AB7
A
278 282Right-handed 310
Helix 17
AB8
A
286 289Right-handed 310
Helix 18
AB9
A
290 310Right-handed alpha
Helix 19
AC1
B
3 16Right-handed alpha
Helix 20
AC2
B
17 19Right-handed 310
Helix 21
AC3
B
30 35Right-handed alpha
Helix 22
AC4
B
36 47Right-handed alpha
Helix 23
AC5
B
57 63Right-handed alpha
Helix 24
AC6
B
83 96Right-handed alpha
Helix 25
AC7
B
109 115Right-handed 310
Helix 26
AC8
B
128 131Right-handed 310
Helix 27
AC9
B
132 150Right-handed alpha
Helix 28
AD1
B
153 187Right-handed alpha
Helix 29
AD2
B
197 199Right-handed 310
Helix 30
AD3
B
200 216Right-handed alpha
Helix 31
AD4
B
226 230Right-handed 310
Helix 32
AD5
B
251 265Right-handed alpha
Helix 33
AD6
B
278 282Right-handed 310
Helix 34
AD7
B
286 289Right-handed 310
Helix 35
AD8
B
290 309Right-handed alpha
Helix 36
AD9
C
3 16Right-handed alpha
Helix 37
AE1
C
29 36Right-handed alpha
Helix 38
AE2
C
36 47Right-handed alpha
Helix 39
AE3
C
57 63Right-handed alpha
Helix 40
AE4
C
83 96Right-handed alpha
Helix 41
AE5
C
109 115Right-handed 310
Helix 42
AE6
C
128 131Right-handed 310
Helix 43
AE7
C
132 149Right-handed alpha
Helix 44
AE8
C
153 187Right-handed alpha
Helix 45
AE9
C
197 199Right-handed 310
Helix 46
AF1
C
200 216Right-handed alpha
Helix 47
AF2
C
226 230Right-handed 310
Helix 48
AF3
C
251 265Right-handed alpha
Helix 49
AF4
C
278 282Right-handed 310
Helix 50
AF5
C
286 289Right-handed 310
Helix 51
AF6
C
290 309Right-handed alpha
Helix 52
AF7
D
3 16Right-handed alpha
Helix 53
AF8
D
17 19Right-handed 310
Helix 54
AF9
D
29 36Right-handed alpha
Helix 55
AG1
D
36 47Right-handed alpha
Helix 56
AG2
D
57 63Right-handed alpha
Helix 57
AG3
D
83 96Right-handed alpha
Helix 58
AG4
D
109 115Right-handed 310
Helix 59
AG5
D
128 131Right-handed 310
Helix 60
AG6
D
132 150Right-handed alpha
Helix 61
AG7
D
153 175Right-handed alpha
Helix 62
AG8
D
175 187Right-handed alpha
Helix 63
AG9
D
197 199Right-handed 310
Helix 64
AH1
D
200 216Right-handed alpha
Helix 65
AH2
D
226 228Right-handed 310
Helix 66
AH3
D
251 265Right-handed alpha
Helix 67
AH4
D
278 282Right-handed 310
Helix 68
AH5
D
286 289Right-handed 310
Helix 69
AH6
D
290 309Right-handed alpha
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There are 8 sheets in PDB entry 9OTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
23 28parallel
Strand 3
A
72 77parallel
Strand 4
A
100 103parallel
Strand 5
A
117 119parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
193 196parallel
Strand 3
A
242 246parallel
Strand 4
A
269 273parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
23 28parallel
Strand 3
B
72 77parallel
Strand 4
B
100 103parallel
Strand 5
B
117 119parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 224first strand
Strand 2
B
193 196parallel
Strand 3
B
242 246parallel
Strand 4
B
269 273parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 56first strand
Strand 2
C
23 28parallel
Strand 3
C
72 77parallel
Strand 4
C
100 103parallel
Strand 5
C
117 119parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 224first strand
Strand 2
C
193 196parallel
Strand 3
C
242 246parallel
Strand 4
C
269 273parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 56first strand
Strand 2
D
23 28parallel
Strand 3
D
72 77parallel
Strand 4
D
100 103parallel
Strand 5
D
117 119parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 224first strand
Strand 2
D
193 196parallel
Strand 3
D
242 246parallel
Strand 4
D
269 273parallel
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