Analysis of interatomic Contacts of Structural Units in PDB entry:
9OTP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OTP entry

There are 10 chains in PDB entry 9OTP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 373
B	THR 2	ASN 373
C	THR 2	ASN 373
D	THR 2	ASN 373
E	THR 2	ASN 373
F	THR 2	ASN 373
G	THR 2	ASN 373
H	THR 2	ASN 373
I	THR 2	ASN 373
J	THR 2	ASN 373

There are134 helices in PDB entry 9OTP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	9	Right-handed 310
Helix 2	AA2	A	10	19	Right-handed alpha
Helix 3	AA3	A	53	57	Right-handed 310
Helix 4	AA4	A	113	125	Right-handed alpha
Helix 5	AA5	A	126	128	Right-handed 310
Helix 6	AA6	A	172	187	Right-handed alpha
Helix 7	AA7	A	212	233	Right-handed alpha
Helix 8	AA8	A	258	263	Right-handed alpha
Helix 9	AA9	A	266	278	Right-handed alpha
Helix 10	AB1	A	280	289	Right-handed alpha
Helix 11	AB2	A	293	300	Right-handed alpha
Helix 12	AB3	A	326	333	Right-handed alpha
Helix 13	AB4	A	347	360	Right-handed alpha
Helix 14	AB5	B	5	9	Right-handed 310
Helix 15	AB6	B	10	19	Right-handed alpha
Helix 16	AB7	B	53	57	Right-handed 310
Helix 17	AB8	B	65	68	Right-handed 310
Helix 18	AB9	B	113	122	Right-handed alpha
Helix 19	AC1	B	123	128	Right-handed 310
Helix 20	AC2	B	172	187	Right-handed alpha
Helix 21	AC3	B	212	233	Right-handed alpha
Helix 22	AC4	B	258	263	Right-handed alpha
Helix 23	AC5	B	266	278	Right-handed alpha
Helix 24	AC6	B	280	288	Right-handed alpha
Helix 25	AC7	B	295	300	Right-handed alpha
Helix 26	AC8	B	326	332	Right-handed alpha
Helix 27	AC9	B	347	360	Right-handed alpha
Helix 28	AD1	C	5	9	Right-handed 310
Helix 29	AD2	C	10	19	Right-handed alpha
Helix 30	AD3	C	53	57	Right-handed 310
Helix 31	AD4	C	113	122	Right-handed alpha
Helix 32	AD5	C	123	128	Right-handed 310
Helix 33	AD6	C	172	187	Right-handed alpha
Helix 34	AD7	C	212	233	Right-handed alpha
Helix 35	AD8	C	258	263	Right-handed alpha
Helix 36	AD9	C	266	278	Right-handed alpha
Helix 37	AE1	C	280	289	Right-handed alpha
Helix 38	AE2	C	295	300	Right-handed alpha
Helix 39	AE3	C	326	333	Right-handed alpha
Helix 40	AE4	C	347	360	Right-handed alpha
Helix 41	AE5	D	5	9	Right-handed 310
Helix 42	AE6	D	10	19	Right-handed alpha
Helix 43	AE7	D	53	57	Right-handed 310
Helix 44	AE8	D	113	122	Right-handed alpha
Helix 45	AE9	D	123	128	Right-handed 310
Helix 46	AF1	D	172	187	Right-handed alpha
Helix 47	AF2	D	212	233	Right-handed alpha
Helix 48	AF3	D	258	263	Right-handed alpha
Helix 49	AF4	D	266	278	Right-handed alpha
Helix 50	AF5	D	280	289	Right-handed alpha
Helix 51	AF6	D	295	299	Right-handed 310
Helix 52	AF7	D	326	332	Right-handed alpha
Helix 53	AF8	D	347	360	Right-handed alpha
Helix 54	AF9	E	5	9	Right-handed 310
Helix 55	AG1	E	10	19	Right-handed alpha
Helix 56	AG2	E	53	57	Right-handed 310
Helix 57	AG3	E	65	68	Right-handed 310
Helix 58	AG4	E	113	123	Right-handed alpha
Helix 59	AG5	E	124	128	Right-handed 310
Helix 60	AG6	E	172	187	Right-handed alpha
Helix 61	AG7	E	212	233	Right-handed alpha
Helix 62	AG8	E	258	263	Right-handed alpha
Helix 63	AG9	E	266	278	Right-handed alpha
Helix 64	AH1	E	280	289	Right-handed alpha
Helix 65	AH2	E	295	299	Right-handed 310
Helix 66	AH3	E	326	333	Right-handed alpha
Helix 67	AH4	E	347	360	Right-handed alpha
Helix 68	AH5	F	5	9	Right-handed 310
Helix 69	AH6	F	10	19	Right-handed alpha
Helix 70	AH7	F	53	57	Right-handed 310
Helix 71	AH8	F	65	68	Right-handed 310
Helix 72	AH9	F	113	123	Right-handed alpha
Helix 73	AI1	F	124	128	Right-handed 310
Helix 74	AI2	F	172	187	Right-handed alpha
Helix 75	AI3	F	212	233	Right-handed alpha
Helix 76	AI4	F	258	263	Right-handed alpha
Helix 77	AI5	F	266	278	Right-handed alpha
Helix 78	AI6	F	280	289	Right-handed alpha
Helix 79	AI7	F	295	299	Right-handed 310
Helix 80	AI8	F	326	333	Right-handed alpha
Helix 81	AI9	F	347	360	Right-handed alpha
Helix 82	AJ1	G	4	9	Right-handed 310
Helix 83	AJ2	G	10	19	Right-handed alpha
Helix 84	AJ3	G	53	57	Right-handed 310
Helix 85	AJ4	G	65	68	Right-handed 310
Helix 86	AJ5	G	113	124	Right-handed alpha
Helix 87	AJ6	G	125	128	Right-handed 310
Helix 88	AJ7	G	172	187	Right-handed alpha
Helix 89	AJ8	G	212	233	Right-handed alpha
Helix 90	AJ9	G	258	263	Right-handed alpha
Helix 91	AK1	G	266	278	Right-handed alpha
Helix 92	AK2	G	280	288	Right-handed alpha
Helix 93	AK3	G	295	299	Right-handed 310
Helix 94	AK4	G	326	333	Right-handed alpha
Helix 95	AK5	G	347	360	Right-handed alpha
Helix 96	AK6	H	4	9	Right-handed 310
Helix 97	AK7	H	10	19	Right-handed alpha
Helix 98	AK8	H	53	57	Right-handed 310
Helix 99	AK9	H	65	67	Right-handed 310
Helix 100	AL1	H	71	74	Right-handed 310
Helix 101	AL2	H	113	125	Right-handed alpha
Helix 102	AL3	H	126	128	Right-handed 310
Helix 103	AL4	H	172	187	Right-handed alpha
Helix 104	AL5	H	212	233	Right-handed alpha
Helix 105	AL6	H	266	278	Right-handed alpha
Helix 106	AL7	H	280	288	Right-handed alpha
Helix 107	AL8	H	294	299	Right-handed 310
Helix 108	AL9	H	326	333	Right-handed alpha
Helix 109	AM1	H	347	360	Right-handed alpha
Helix 110	AM2	I	4	9	Right-handed 310
Helix 111	AM3	I	10	19	Right-handed alpha
Helix 112	AM4	I	53	57	Right-handed 310
Helix 113	AM5	I	65	67	Right-handed 310
Helix 114	AM6	I	113	123	Right-handed alpha
Helix 115	AM7	I	172	187	Right-handed alpha
Helix 116	AM8	I	212	233	Right-handed alpha
Helix 117	AM9	I	258	263	Right-handed alpha
Helix 118	AN1	I	266	278	Right-handed alpha
Helix 119	AN2	I	280	288	Right-handed alpha
Helix 120	AN3	I	295	299	Right-handed 310
Helix 121	AN4	I	326	333	Right-handed alpha
Helix 122	AN5	I	347	361	Right-handed alpha
Helix 123	AN6	J	5	9	Right-handed 310
Helix 124	AN7	J	10	19	Right-handed alpha
Helix 125	AN8	J	53	57	Right-handed 310
Helix 126	AN9	J	65	68	Right-handed 310
Helix 127	AO1	J	113	123	Right-handed alpha
Helix 128	AO2	J	172	187	Right-handed alpha
Helix 129	AO3	J	212	233	Right-handed alpha
Helix 130	AO4	J	266	278	Right-handed alpha
Helix 131	AO5	J	280	288	Right-handed alpha
Helix 132	AO6	J	295	299	Right-handed 310
Helix 133	AO7	J	326	333	Right-handed alpha
Helix 134	AO8	J	347	360	Right-handed alpha

There are 20 sheets in PDB entry 9OTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	76	86	anti-parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	26	33	parallel
Strand 5	A	40	47	anti-parallel
Strand 6	B	190	195	anti-parallel
Strand 7	B	201	210	anti-parallel
Strand 8	B	130	140	anti-parallel
Strand 9	B	235	237	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	76	86	anti-parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	26	33	parallel
Strand 5	A	40	47	anti-parallel
Strand 6	B	190	195	anti-parallel
Strand 7	B	201	210	anti-parallel
Strand 8	B	130	140	anti-parallel
Strand 9	B	252	257	anti-parallel
Strand 10	B	337	339	anti-parallel
Strand 11	B	323	324	anti-parallel
Strand 12	B	314	315	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	252	257	anti-parallel
Strand 4	A	337	339	anti-parallel
Strand 5	A	323	325	anti-parallel
Strand 6	A	314	316	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	201	210	anti-parallel
Strand 4	A	190	195	anti-parallel
Strand 5	E	40	47	anti-parallel
Strand 6	E	26	33	anti-parallel
Strand 7	E	95	102	parallel
Strand 8	E	76	86	anti-parallel
Strand 9	E	60	63	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	76	86	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	26	33	parallel
Strand 5	B	40	47	anti-parallel
Strand 6	C	190	195	anti-parallel
Strand 7	C	201	210	anti-parallel
Strand 8	C	130	140	anti-parallel
Strand 9	C	235	237	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	76	86	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	26	33	parallel
Strand 5	B	40	47	anti-parallel
Strand 6	C	190	195	anti-parallel
Strand 7	C	201	210	anti-parallel
Strand 8	C	130	140	anti-parallel
Strand 9	C	252	257	anti-parallel
Strand 10	C	337	339	anti-parallel
Strand 11	C	323	325	anti-parallel
Strand 12	C	314	316	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	26	33	parallel
Strand 5	C	40	47	anti-parallel
Strand 6	D	190	195	anti-parallel
Strand 7	D	201	210	anti-parallel
Strand 8	D	130	140	anti-parallel
Strand 9	D	235	237	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	26	33	parallel
Strand 5	C	40	47	anti-parallel
Strand 6	D	190	195	anti-parallel
Strand 7	D	201	210	anti-parallel
Strand 8	D	130	140	anti-parallel
Strand 9	D	254	257	anti-parallel
Strand 10	D	337	339	anti-parallel
Strand 11	D	323	325	anti-parallel
Strand 12	D	314	316	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	76	86	anti-parallel
Strand 3	D	95	102	anti-parallel
Strand 4	D	26	33	parallel
Strand 5	D	40	47	anti-parallel
Strand 6	E	190	195	anti-parallel
Strand 7	E	201	210	anti-parallel
Strand 8	E	130	140	anti-parallel
Strand 9	E	235	237	anti-parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	76	86	anti-parallel
Strand 3	D	95	102	anti-parallel
Strand 4	D	26	33	parallel
Strand 5	D	40	47	anti-parallel
Strand 6	E	190	195	anti-parallel
Strand 7	E	201	210	anti-parallel
Strand 8	E	130	140	anti-parallel
Strand 9	E	254	257	anti-parallel
Strand 10	E	337	339	anti-parallel
Strand 11	E	323	324	anti-parallel
Strand 12	E	314	315	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	76	86	anti-parallel
Strand 3	F	95	102	anti-parallel
Strand 4	F	26	33	parallel
Strand 5	F	40	47	anti-parallel
Strand 6	G	192	195	anti-parallel
Strand 7	G	201	210	anti-parallel
Strand 8	G	130	140	anti-parallel
Strand 9	G	235	237	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	76	86	anti-parallel
Strand 3	F	95	102	anti-parallel
Strand 4	F	26	33	parallel
Strand 5	F	40	47	anti-parallel
Strand 6	G	192	195	anti-parallel
Strand 7	G	201	210	anti-parallel
Strand 8	G	130	140	anti-parallel
Strand 9	G	252	257	anti-parallel
Strand 10	G	337	339	anti-parallel
Strand 11	G	323	325	anti-parallel
Strand 12	G	314	316	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	252	257	anti-parallel
Strand 4	F	337	339	anti-parallel
Strand 5	F	323	325	anti-parallel
Strand 6	F	314	316	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	201	210	anti-parallel
Strand 4	F	190	195	anti-parallel
Strand 5	J	40	47	anti-parallel
Strand 6	J	26	33	anti-parallel
Strand 7	J	95	102	parallel
Strand 8	J	76	86	anti-parallel
Strand 9	J	60	63	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	63	first strand
Strand 2	G	76	86	anti-parallel
Strand 3	G	95	102	anti-parallel
Strand 4	G	26	33	parallel
Strand 5	G	40	47	anti-parallel
Strand 6	H	190	195	anti-parallel
Strand 7	H	201	210	anti-parallel
Strand 8	H	130	140	anti-parallel
Strand 9	H	235	237	anti-parallel

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There are 12 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	63	first strand
Strand 2	G	76	86	anti-parallel
Strand 3	G	95	102	anti-parallel
Strand 4	G	26	33	parallel
Strand 5	G	40	47	anti-parallel
Strand 6	H	190	195	anti-parallel
Strand 7	H	201	210	anti-parallel
Strand 8	H	130	140	anti-parallel
Strand 9	H	252	257	anti-parallel
Strand 10	H	337	339	anti-parallel
Strand 11	H	323	325	anti-parallel
Strand 12	H	314	316	parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	76	86	anti-parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	26	33	parallel
Strand 5	H	40	47	anti-parallel
Strand 6	I	190	195	anti-parallel
Strand 7	I	201	210	anti-parallel
Strand 8	I	130	140	anti-parallel
Strand 9	I	235	237	anti-parallel

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There are 12 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	76	86	anti-parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	26	33	parallel
Strand 5	H	40	47	anti-parallel
Strand 6	I	190	195	anti-parallel
Strand 7	I	201	210	anti-parallel
Strand 8	I	130	140	anti-parallel
Strand 9	I	252	257	anti-parallel
Strand 10	I	337	339	anti-parallel
Strand 11	I	323	324	anti-parallel
Strand 12	I	314	315	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	63	first strand
Strand 2	I	76	86	anti-parallel
Strand 3	I	95	102	anti-parallel
Strand 4	I	26	33	parallel
Strand 5	I	40	47	anti-parallel
Strand 6	J	190	195	anti-parallel
Strand 7	J	201	210	anti-parallel
Strand 8	J	130	140	anti-parallel
Strand 9	J	235	237	anti-parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	63	first strand
Strand 2	I	76	86	anti-parallel
Strand 3	I	95	102	anti-parallel
Strand 4	I	26	33	parallel
Strand 5	I	40	47	anti-parallel
Strand 6	J	190	195	anti-parallel
Strand 7	J	201	210	anti-parallel
Strand 8	J	130	140	anti-parallel
Strand 9	J	254	257	anti-parallel
Strand 10	J	337	339	anti-parallel
Strand 11	J	323	325	anti-parallel
Strand 12	J	314	316	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OTP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OTP