Analysis of interatomic Contacts of Structural Units in PDB entry:
9OTS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OTS entry

There are 6 chains in PDB entry 9OTS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	GLY 456
B	GLU 11	GLY 456
C	GLU 11	GLY 456
D	THR 25	GLN 281
E	THR 25	GLN 281
F	THR 25	GLN 281

There are 66 helices in PDB entry 9OTS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	90	Right-handed alpha
Helix 2	AA2	A	128	136	Right-handed alpha
Helix 3	AA3	A	164	168	Right-handed 310
Helix 4	AA4	A	169	173	Right-handed 310
Helix 5	AA5	A	175	179	Right-handed 310
Helix 6	AA6	A	219	224	Right-handed 310
Helix 7	AA7	A	236	242	Right-handed alpha
Helix 8	AA8	A	247	255	Right-handed alpha
Helix 9	AA9	A	257	261	Right-handed 310
Helix 10	AB1	A	269	286	Right-handed alpha
Helix 11	AB2	A	303	312	Right-handed alpha
Helix 12	AB3	A	344	349	Right-handed 310
Helix 13	AB4	A	405	408	Right-handed 310
Helix 14	AB5	B	69	90	Right-handed alpha
Helix 15	AB6	B	128	136	Right-handed alpha
Helix 16	AB7	B	164	168	Right-handed 310
Helix 17	AB8	B	169	173	Right-handed 310
Helix 18	AB9	B	175	179	Right-handed 310
Helix 19	AC1	B	219	224	Right-handed 310
Helix 20	AC2	B	236	242	Right-handed alpha
Helix 21	AC3	B	247	255	Right-handed alpha
Helix 22	AC4	B	257	261	Right-handed 310
Helix 23	AC5	B	269	286	Right-handed alpha
Helix 24	AC6	B	303	312	Right-handed alpha
Helix 25	AC7	B	344	349	Right-handed 310
Helix 26	AC8	B	405	408	Right-handed 310
Helix 27	AC9	C	69	90	Right-handed alpha
Helix 28	AD1	C	128	136	Right-handed alpha
Helix 29	AD2	C	164	168	Right-handed 310
Helix 30	AD3	C	169	173	Right-handed 310
Helix 31	AD4	C	175	179	Right-handed 310
Helix 32	AD5	C	219	224	Right-handed 310
Helix 33	AD6	C	236	242	Right-handed alpha
Helix 34	AD7	C	247	255	Right-handed alpha
Helix 35	AD8	C	257	261	Right-handed 310
Helix 36	AD9	C	269	286	Right-handed alpha
Helix 37	AE1	C	303	312	Right-handed alpha
Helix 38	AE2	C	344	349	Right-handed 310
Helix 39	AE3	C	405	408	Right-handed 310
Helix 40	AE4	D	28	39	Right-handed alpha
Helix 41	AE5	D	59	66	Right-handed 310
Helix 42	AE6	D	77	88	Right-handed alpha
Helix 43	AE7	D	110	119	Right-handed alpha
Helix 44	AE8	D	192	201	Right-handed alpha
Helix 45	AE9	D	218	224	Right-handed alpha
Helix 46	AF1	D	241	246	Right-handed alpha
Helix 47	AF2	D	248	271	Right-handed alpha
Helix 48	AF3	D	275	281	Right-handed alpha
Helix 49	AF4	E	28	39	Right-handed alpha
Helix 50	AF5	E	59	66	Right-handed 310
Helix 51	AF6	E	77	88	Right-handed alpha
Helix 52	AF7	E	110	119	Right-handed alpha
Helix 53	AF8	E	192	201	Right-handed alpha
Helix 54	AF9	E	218	224	Right-handed alpha
Helix 55	AG1	E	241	246	Right-handed alpha
Helix 56	AG2	E	248	271	Right-handed alpha
Helix 57	AG3	E	275	281	Right-handed alpha
Helix 58	AG4	F	28	39	Right-handed alpha
Helix 59	AG5	F	59	66	Right-handed 310
Helix 60	AG6	F	77	88	Right-handed alpha
Helix 61	AG7	F	110	119	Right-handed alpha
Helix 62	AG8	F	192	201	Right-handed alpha
Helix 63	AG9	F	218	224	Right-handed alpha
Helix 64	AH1	F	241	246	Right-handed alpha
Helix 65	AH2	F	248	271	Right-handed alpha
Helix 66	AH3	F	275	281	Right-handed alpha

There are 30 sheets in PDB entry 9OTS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	447	449	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	54	58	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	148	150	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	229	230	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	225	226	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	202	first strand
Strand 2	A	208	216	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	442	443	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	431	434	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	61	64	anti-parallel
Strand 3	B	447	449	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	54	58	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	148	150	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	229	230	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	225	226	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	202	first strand
Strand 2	B	208	216	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	442	443	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	431	434	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	447	449	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	54	58	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	148	150	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	229	230	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	225	226	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	202	first strand
Strand 2	C	208	216	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	375	first strand
Strand 2	C	442	443	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	413	first strand
Strand 2	C	431	434	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	187	first strand
Strand 2	D	163	176	anti-parallel
Strand 3	D	145	156	anti-parallel
Strand 4	D	48	56	anti-parallel
Strand 5	D	229	234	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	205	first strand
Strand 2	D	216	217	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	187	first strand
Strand 2	E	163	176	anti-parallel
Strand 3	E	145	156	anti-parallel
Strand 4	E	48	56	anti-parallel
Strand 5	E	229	234	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	205	first strand
Strand 2	E	216	217	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	187	first strand
Strand 2	F	163	176	anti-parallel
Strand 3	F	145	156	anti-parallel
Strand 4	F	48	56	anti-parallel
Strand 5	F	229	234	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	205	first strand
Strand 2	F	216	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OTS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OTS