Analysis of interatomic Contacts of Structural Units in PDB entry:
9OUB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OUB entry

There is 1 chain in PDB entry 9OUB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 173	HIS 1465

There are 39 helices in PDB entry 9OUB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	231	236	Right-handed alpha
Helix 2	AA2	A	241	245	Right-handed 310
Helix 3	AA3	A	282	284	Right-handed 310
Helix 4	AA4	A	288	302	Right-handed alpha
Helix 5	AA5	A	315	338	Right-handed alpha
Helix 6	AA6	A	340	352	Right-handed alpha
Helix 7	AA7	A	353	362	Right-handed 310
Helix 8	AA8	A	383	390	Right-handed 310
Helix 9	AA9	A	430	446	Right-handed alpha
Helix 10	AB1	A	446	451	Right-handed alpha
Helix 11	AB2	A	454	458	Right-handed 310
Helix 12	AB3	A	466	471	Right-handed 310
Helix 13	AB4	A	472	486	Right-handed alpha
Helix 14	AB5	A	491	498	Right-handed alpha
Helix 15	AB6	A	508	516	Right-handed alpha
Helix 16	AB7	A	524	536	Right-handed alpha
Helix 17	AB8	A	553	559	Right-handed alpha
Helix 18	AB9	A	587	599	Right-handed alpha
Helix 19	AC1	A	609	625	Right-handed alpha
Helix 20	AC2	A	635	646	Right-handed alpha
Helix 21	AC3	A	656	658	Right-handed 310
Helix 22	AC4	A	672	687	Right-handed alpha
Helix 23	AC5	A	701	705	Right-handed 310
Helix 24	AC6	A	730	734	Right-handed 310
Helix 25	AC7	A	761	765	Right-handed 310
Helix 26	AC8	A	786	793	Right-handed 310
Helix 27	AC9	A	853	858	Right-handed alpha
Helix 28	AD1	A	874	877	Right-handed 310
Helix 29	AD2	A	878	886	Right-handed alpha
Helix 30	AD3	A	886	893	Right-handed alpha
Helix 31	AD4	A	912	917	Right-handed alpha
Helix 32	AD5	A	939	953	Right-handed alpha
Helix 33	AD6	A	1007	1013	Right-handed alpha
Helix 34	AD7	A	1016	1024	Right-handed alpha
Helix 35	AD8	A	1025	1030	Right-handed alpha
Helix 36	AD9	A	1049	1051	Right-handed 310
Helix 37	AE1	A	1079	1083	Right-handed 310
Helix 38	AE2	A	1086	1091	Right-handed 310
Helix 39	AE3	A	1142	1146	Right-handed 310

There are 22 sheets in PDB entry 9OUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	201	205	anti-parallel
Strand 3	A	194	198	anti-parallel
Strand 4	A	1160	1163	parallel
Strand 5	A	1169	1172	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	1095	1100	anti-parallel
Strand 3	A	1105	1108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	258	first strand
Strand 2	A	279	280	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	270	272	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	965	966	first strand
Strand 2	A	424	426	anti-parallel
Strand 3	A	1053	1057	anti-parallel
Strand 4	A	377	380	anti-parallel
Strand 5	A	971	980	anti-parallel
Strand 6	A	993	1002	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	502	first strand
Strand 2	A	461	464	parallel
Strand 3	A	956	961	parallel
Strand 4	A	897	899	parallel
Strand 5	A	860	863	parallel
Strand 6	A	650	654	parallel
Strand 7	A	577	578	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	691	697	first strand
Strand 2	A	711	717	anti-parallel
Strand 3	A	738	743	anti-parallel
Strand 4	A	818	826	anti-parallel
Strand 5	A	768	775	anti-parallel
Strand 6	A	794	795	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	782	first strand
Strand 2	A	768	775	anti-parallel
Strand 3	A	818	826	anti-parallel
Strand 4	A	812	813	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	759	first strand
Strand 2	A	801	804	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1118	1121	first strand
Strand 2	A	1127	1130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1139	1141	first strand
Strand 2	A	1148	1150	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1182	1186	first strand
Strand 2	A	1191	1195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1204	1207	first strand
Strand 2	A	1212	1215	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1228	first strand
Strand 2	A	1234	1237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1248	1251	first strand
Strand 2	A	1257	1260	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1269	1273	first strand
Strand 2	A	1276	1280	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1289	1290	first strand
Strand 2	A	1298	1299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1358	1359	first strand
Strand 2	A	1362	1363	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1376	1379	first strand
Strand 2	A	1385	1388	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1397	1401	first strand
Strand 2	A	1404	1408	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1419	1421	first strand
Strand 2	A	1427	1429	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1443	1445	first strand
Strand 2	A	1450	1453	anti-parallel
Strand 3	A	1459	1460	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OUB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OUB