Analysis of interatomic Contacts of Structural Units in PDB entry:
9OUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9OUP entry

There are 7 chains in PDB entry 9OUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9LYS 221
B
 ASN 8ASN 217
C
 TYR 9MET 221
D
 GLY 25ARG 232
E
 SER 7ASN 217
H
 GLU 1SER 112
L
 TYR 1ILE 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9OUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
86 91Right-handed alpha
Helix 3
AA3
A
173 176Right-handed 310
Helix 4
AA4
B
9 21Right-handed alpha
Helix 5
AA5
B
84 90Right-handed 310
Helix 6
AA6
B
170 173Right-handed 310
Helix 7
AA7
C
10 21Right-handed alpha
Helix 8
AA8
C
87 92Right-handed alpha
Helix 9
AA9
D
26 36Right-handed alpha
Helix 10
AB1
D
99 106Right-handed 310
Helix 11
AB2
E
8 21Right-handed alpha
Helix 12
AB3
E
70 73Right-handed 310
Helix 13
AB4
E
84 90Right-handed 310
Helix 14
AB5
E
170 173Right-handed 310
Helix 15
AB6
H
61 64Right-handed 310
Helix 16
AB7
H
83 87Right-handed 310
Helix 17
AB8
L
79 83Right-handed 310
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There are 21 sheets in PDB entry 9OUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
116 121anti-parallel
Strand 3
A
125 137anti-parallel
Strand 4
A
58 70anti-parallel
Strand 5
A
38 53anti-parallel
Strand 6
A
166 170parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
125 137anti-parallel
Strand 3
A
58 70anti-parallel
Strand 4
A
38 53anti-parallel
Strand 5
A
178 180parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
149 158anti-parallel
Strand 3
A
208 220anti-parallel
Strand 4
A
190 203anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
114 118anti-parallel
Strand 3
B
123 135anti-parallel
Strand 4
B
56 68anti-parallel
Strand 5
B
36 47anti-parallel
Strand 6
B
164 168parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 106first strand
Strand 2
B
123 135anti-parallel
Strand 3
B
56 68anti-parallel
Strand 4
B
36 47anti-parallel
Strand 5
B
175 176parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
147 156anti-parallel
Strand 3
B
204 216anti-parallel
Strand 4
B
186 199anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
115 120anti-parallel
Strand 3
C
124 136anti-parallel
Strand 4
C
57 69anti-parallel
Strand 5
C
37 52anti-parallel
Strand 6
C
165 169parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
124 136anti-parallel
Strand 3
C
57 69anti-parallel
Strand 4
C
37 52anti-parallel
Strand 5
C
177 178parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 99first strand
Strand 2
C
148 157anti-parallel
Strand 3
C
207 219anti-parallel
Strand 4
C
189 202anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 98first strand
Strand 2
D
129 134anti-parallel
Strand 3
D
138 150anti-parallel
Strand 4
D
116 121anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 98first strand
Strand 2
D
129 134anti-parallel
Strand 3
D
138 150anti-parallel
Strand 4
D
71 83anti-parallel
Strand 5
D
51 66anti-parallel
Strand 6
D
179 190parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 113first strand
Strand 2
D
162 171anti-parallel
Strand 3
D
220 231anti-parallel
Strand 4
D
201 213anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 83first strand
Strand 2
E
114 118anti-parallel
Strand 3
E
123 135anti-parallel
Strand 4
E
56 68anti-parallel
Strand 5
E
36 51anti-parallel
Strand 6
E
164 168parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 106first strand
Strand 2
E
123 135anti-parallel
Strand 3
E
56 68anti-parallel
Strand 4
E
36 51anti-parallel
Strand 5
E
175 176parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
96 98first strand
Strand 2
E
147 156anti-parallel
Strand 3
E
203 216anti-parallel
Strand 4
E
186 200anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
100 103anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 66anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
101 104parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
101 104parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
96 97anti-parallel
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