Analysis of interatomic Contacts of Structural Units in PDB entry:
9OVT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OVT entry

There are 4 chains in PDB entry 9OVT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 385	ARG 815
B	GLN 392	ALA 820
C	SER 385	ARG 815
D	GLN 392	ALA 820

There are 60 helices in PDB entry 9OVT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	407	411	Right-handed 310
Helix 2	AA2	A	412	415	Right-handed 310
Helix 3	AA3	A	419	433	Right-handed alpha
Helix 4	AA4	A	458	465	Right-handed alpha
Helix 5	AA5	A	478	483	Right-handed alpha
Helix 6	AA6	A	518	543	Right-handed alpha
Helix 7	AA7	A	568	579	Right-handed alpha
Helix 8	AA8	A	591	625	Right-handed alpha
Helix 9	AA9	A	649	657	Right-handed alpha
Helix 10	AB1	A	660	671	Right-handed alpha
Helix 11	AB2	A	681	692	Right-handed alpha
Helix 12	AB3	A	702	709	Right-handed alpha
Helix 13	AB4	A	739	752	Right-handed alpha
Helix 14	AB5	A	753	758	Right-handed alpha
Helix 15	AB6	A	758	764	Right-handed alpha
Helix 16	AB7	A	789	815	Right-handed alpha
Helix 17	AB8	B	423	437	Right-handed alpha
Helix 18	AB9	B	464	469	Right-handed alpha
Helix 19	AC1	B	482	487	Right-handed alpha
Helix 20	AC2	B	522	546	Right-handed alpha
Helix 21	AC3	B	572	585	Right-handed alpha
Helix 22	AC4	B	595	624	Right-handed alpha
Helix 23	AC5	B	636	642	Right-handed alpha
Helix 24	AC6	B	653	661	Right-handed alpha
Helix 25	AC7	B	664	677	Right-handed alpha
Helix 26	AC8	B	685	696	Right-handed alpha
Helix 27	AC9	B	706	713	Right-handed alpha
Helix 28	AD1	B	744	756	Right-handed alpha
Helix 29	AD2	B	757	768	Right-handed alpha
Helix 30	AD3	B	793	817	Right-handed alpha
Helix 31	AD4	C	407	411	Right-handed 310
Helix 32	AD5	C	412	415	Right-handed 310
Helix 33	AD6	C	419	433	Right-handed alpha
Helix 34	AD7	C	458	465	Right-handed alpha
Helix 35	AD8	C	478	483	Right-handed alpha
Helix 36	AD9	C	518	543	Right-handed alpha
Helix 37	AE1	C	568	579	Right-handed alpha
Helix 38	AE2	C	591	625	Right-handed alpha
Helix 39	AE3	C	649	657	Right-handed alpha
Helix 40	AE4	C	660	671	Right-handed alpha
Helix 41	AE5	C	681	692	Right-handed alpha
Helix 42	AE6	C	702	709	Right-handed alpha
Helix 43	AE7	C	739	752	Right-handed alpha
Helix 44	AE8	C	753	758	Right-handed alpha
Helix 45	AE9	C	758	764	Right-handed alpha
Helix 46	AF1	C	789	815	Right-handed alpha
Helix 47	AF2	D	423	437	Right-handed alpha
Helix 48	AF3	D	464	469	Right-handed alpha
Helix 49	AF4	D	482	487	Right-handed alpha
Helix 50	AF5	D	522	546	Right-handed alpha
Helix 51	AF6	D	572	585	Right-handed alpha
Helix 52	AF7	D	595	624	Right-handed alpha
Helix 53	AF8	D	636	642	Right-handed alpha
Helix 54	AF9	D	653	661	Right-handed alpha
Helix 55	AG1	D	664	677	Right-handed alpha
Helix 56	AG2	D	685	696	Right-handed alpha
Helix 57	AG3	D	706	713	Right-handed alpha
Helix 58	AG4	D	744	756	Right-handed alpha
Helix 59	AG5	D	757	768	Right-handed alpha
Helix 60	AG6	D	793	817	Right-handed alpha

There are 14 sheets in PDB entry 9OVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	395	first strand
Strand 2	A	436	440	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	486	first strand
Strand 2	A	732	733	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	701	first strand
Strand 2	A	496	501	anti-parallel
Strand 3	A	716	719	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	399	first strand
Strand 2	B	439	444	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	649	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	395	first strand
Strand 2	C	436	440	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	486	first strand
Strand 2	C	732	733	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	701	first strand
Strand 2	C	496	501	anti-parallel
Strand 3	C	716	719	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	399	first strand
Strand 2	D	439	444	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	649	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OVT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OVT