Analysis of interatomic Contacts of Structural Units in PDB entry:
9OVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OVV entry

There are 8 chains in PDB entry 9OVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 385	ARG 815
B	GLN 392	ARG 819
C	SER 385	ARG 815
D	GLN 392	ARG 819
E	ALA 2	SER 143
F	ALA 2	SER 143
G	ALA 2	SER 143
H	ALA 2	SER 143

There are 92 helices in PDB entry 9OVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	412	415	Right-handed 310
Helix 2	AA2	A	419	433	Right-handed alpha
Helix 3	AA3	A	459	464	Right-handed alpha
Helix 4	AA4	A	478	483	Right-handed alpha
Helix 5	AA5	A	518	542	Right-handed alpha
Helix 6	AA6	A	568	581	Right-handed alpha
Helix 7	AA7	A	596	620	Right-handed alpha
Helix 8	AA8	A	632	637	Right-handed alpha
Helix 9	AA9	A	649	658	Right-handed alpha
Helix 10	AB1	A	660	672	Right-handed alpha
Helix 11	AB2	A	681	692	Right-handed alpha
Helix 12	AB3	A	703	705	Right-handed 310
Helix 13	AB4	A	707	711	Right-handed 310
Helix 14	AB5	A	739	752	Right-handed alpha
Helix 15	AB6	A	753	763	Right-handed alpha
Helix 16	AB7	A	789	815	Right-handed alpha
Helix 17	AB8	B	416	421	Right-handed 310
Helix 18	AB9	B	423	437	Right-handed alpha
Helix 19	AC1	B	462	467	Right-handed 310
Helix 20	AC2	B	482	487	Right-handed alpha
Helix 21	AC3	B	515	519	Right-handed 310
Helix 22	AC4	B	522	544	Right-handed alpha
Helix 23	AC5	B	572	585	Right-handed alpha
Helix 24	AC6	B	595	617	Right-handed alpha
Helix 25	AC7	B	620	624	Right-handed 310
Helix 26	AC8	B	637	641	Right-handed 310
Helix 27	AC9	B	653	661	Right-handed alpha
Helix 28	AD1	B	666	675	Right-handed alpha
Helix 29	AD2	B	685	694	Right-handed alpha
Helix 30	AD3	B	705	713	Right-handed alpha
Helix 31	AD4	B	742	750	Right-handed alpha
Helix 32	AD5	B	750	756	Right-handed alpha
Helix 33	AD6	B	757	767	Right-handed alpha
Helix 34	AD7	B	788	817	Right-handed alpha
Helix 35	AD8	C	412	415	Right-handed 310
Helix 36	AD9	C	419	433	Right-handed alpha
Helix 37	AE1	C	459	464	Right-handed alpha
Helix 38	AE2	C	478	483	Right-handed alpha
Helix 39	AE3	C	518	542	Right-handed alpha
Helix 40	AE4	C	568	581	Right-handed alpha
Helix 41	AE5	C	596	620	Right-handed alpha
Helix 42	AE6	C	632	637	Right-handed alpha
Helix 43	AE7	C	649	658	Right-handed alpha
Helix 44	AE8	C	660	672	Right-handed alpha
Helix 45	AE9	C	681	692	Right-handed alpha
Helix 46	AF1	C	703	705	Right-handed 310
Helix 47	AF2	C	707	711	Right-handed 310
Helix 48	AF3	C	739	752	Right-handed alpha
Helix 49	AF4	C	753	763	Right-handed alpha
Helix 50	AF5	C	789	815	Right-handed alpha
Helix 51	AF6	D	416	421	Right-handed 310
Helix 52	AF7	D	423	437	Right-handed alpha
Helix 53	AF8	D	462	467	Right-handed 310
Helix 54	AF9	D	482	487	Right-handed alpha
Helix 55	AG1	D	515	519	Right-handed 310
Helix 56	AG2	D	522	544	Right-handed alpha
Helix 57	AG3	D	572	585	Right-handed alpha
Helix 58	AG4	D	595	617	Right-handed alpha
Helix 59	AG5	D	620	624	Right-handed 310
Helix 60	AG6	D	637	641	Right-handed 310
Helix 61	AG7	D	653	661	Right-handed alpha
Helix 62	AG8	D	666	675	Right-handed alpha
Helix 63	AG9	D	685	694	Right-handed alpha
Helix 64	AH1	D	705	713	Right-handed alpha
Helix 65	AH2	D	742	750	Right-handed alpha
Helix 66	AH3	D	750	756	Right-handed alpha
Helix 67	AH4	D	757	767	Right-handed alpha
Helix 68	AH5	D	788	817	Right-handed alpha
Helix 69	AH6	E	4	32	Right-handed alpha
Helix 70	AH7	E	42	47	Right-handed alpha
Helix 71	AH8	E	48	51	Right-handed 310
Helix 72	AH9	E	52	68	Right-handed alpha
Helix 73	AI1	E	74	90	Right-handed alpha
Helix 74	AI2	E	108	117	Right-handed alpha
Helix 75	AI3	E	117	142	Right-handed alpha
Helix 76	AI4	F	4	38	Right-handed alpha
Helix 77	AI5	F	51	69	Right-handed alpha
Helix 78	AI6	F	73	91	Right-handed alpha
Helix 79	AI7	F	103	107	Right-handed 310
Helix 80	AI8	F	108	143	Right-handed alpha
Helix 81	AI9	G	4	32	Right-handed alpha
Helix 82	AJ1	G	42	47	Right-handed alpha
Helix 83	AJ2	G	48	51	Right-handed 310
Helix 84	AJ3	G	52	69	Right-handed alpha
Helix 85	AJ4	G	74	90	Right-handed alpha
Helix 86	AJ5	G	108	117	Right-handed alpha
Helix 87	AJ6	G	117	142	Right-handed alpha
Helix 88	AJ7	H	4	38	Right-handed alpha
Helix 89	AJ8	H	51	69	Right-handed alpha
Helix 90	AJ9	H	73	91	Right-handed alpha
Helix 91	AK1	H	103	107	Right-handed 310
Helix 92	AK2	H	108	143	Right-handed alpha

There are 20 sheets in PDB entry 9OVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	395	first strand
Strand 2	A	436	440	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	450	first strand
Strand 2	A	455	456	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	731	732	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	726	727	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	696	701	anti-parallel
Strand 3	A	642	644	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	399	first strand
Strand 2	B	440	444	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	730	731	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	702	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	395	first strand
Strand 2	C	436	440	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	450	first strand
Strand 2	C	455	456	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	487	first strand
Strand 2	C	731	732	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	726	727	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	696	701	anti-parallel
Strand 3	C	642	644	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	440	444	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	498	first strand
Strand 2	D	730	731	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	702	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OVV