Analysis of interatomic Contacts of Structural Units in PDB entry:
9OXI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OXI entry

There is 1 chain in PDB entry 9OXI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 744	GLU 2527

There are 52 helices in PDB entry 9OXI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	744	750	Right-handed alpha
Helix 2	AA2	A	757	763	Right-handed alpha
Helix 3	AA3	A	769	782	Right-handed alpha
Helix 4	AA4	A	784	788	Right-handed 310
Helix 5	AA5	A	814	819	Right-handed alpha
Helix 6	AA6	A	998	1002	Right-handed 310
Helix 7	AA7	A	1006	1011	Right-handed alpha
Helix 8	AA8	A	1027	1034	Right-handed alpha
Helix 9	AA9	A	1051	1057	Right-handed 310
Helix 10	AB1	A	1101	1106	Right-handed alpha
Helix 11	AB2	A	1189	1194	Right-handed alpha
Helix 12	AB3	A	1213	1217	Right-handed 310
Helix 13	AB4	A	1240	1245	Right-handed 310
Helix 14	AB5	A	1261	1267	Right-handed 310
Helix 15	AB6	A	1285	1291	Right-handed 310
Helix 16	AB7	A	1316	1328	Right-handed alpha
Helix 17	AB8	A	1346	1355	Right-handed alpha
Helix 18	AB9	A	1398	1402	Right-handed 310
Helix 19	AC1	A	1404	1409	Right-handed 310
Helix 20	AC2	A	1426	1431	Right-handed alpha
Helix 21	AC3	A	1431	1442	Right-handed alpha
Helix 22	AC4	A	1465	1471	Right-handed alpha
Helix 23	AC5	A	1494	1509	Right-handed alpha
Helix 24	AC6	A	1512	1516	Right-handed 310
Helix 25	AC7	A	1525	1538	Right-handed alpha
Helix 26	AC8	A	1549	1560	Right-handed alpha
Helix 27	AC9	A	1568	1579	Right-handed alpha
Helix 28	AD1	A	1599	1613	Right-handed alpha
Helix 29	AD2	A	1643	1647	Right-handed 310
Helix 30	AD3	A	1648	1656	Right-handed alpha
Helix 31	AD4	A	1669	1673	Right-handed 310
Helix 32	AD5	A	1703	1713	Right-handed alpha
Helix 33	AD6	A	1770	1792	Right-handed alpha
Helix 34	AD7	A	1793	1796	Right-handed 310
Helix 35	AD8	A	1829	1835	Right-handed alpha
Helix 36	AD9	A	1836	1840	Right-handed 310
Helix 37	AE1	A	1851	1856	Right-handed alpha
Helix 38	AE2	A	1913	1925	Right-handed alpha
Helix 39	AE3	A	1954	1961	Right-handed alpha
Helix 40	AE4	A	1969	1987	Right-handed alpha
Helix 41	AE5	A	1996	1998	Right-handed 310
Helix 42	AE6	A	2035	2039	Right-handed 310
Helix 43	AE7	A	2040	2044	Right-handed 310
Helix 44	AE8	A	2055	2068	Right-handed alpha
Helix 45	AE9	A	2070	2079	Right-handed alpha
Helix 46	AF1	A	2081	2086	Right-handed alpha
Helix 47	AF2	A	2094	2099	Right-handed alpha
Helix 48	AF3	A	2104	2115	Right-handed alpha
Helix 49	AF4	A	2127	2133	Right-handed alpha
Helix 50	AF5	A	2135	2139	Right-handed alpha
Helix 51	AF6	A	2389	2397	Right-handed alpha
Helix 52	AF7	A	2499	2525	Right-handed alpha

There are 14 sheets in PDB entry 9OXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	987	988	first strand
Strand 2	A	1015	1017	parallel
Strand 3	A	1039	1041	parallel
Strand 4	A	1063	1065	parallel
Strand 5	A	1087	1090	parallel
Strand 6	A	1111	1113	parallel
Strand 7	A	1133	1135	parallel
Strand 8	A	1157	1159	parallel
Strand 9	A	1177	1179	parallel
Strand 10	A	1200	1202	parallel
Strand 11	A	1224	1226	parallel
Strand 12	A	1249	1251	parallel
Strand 13	A	1272	1274	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1329	1330	first strand
Strand 2	A	1523	1524	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1375	1378	first strand
Strand 2	A	1388	1394	anti-parallel
Strand 3	A	1334	1341	parallel
Strand 4	A	1413	1418	parallel
Strand 5	A	1447	1451	parallel
Strand 6	A	1482	1487	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1547	1548	first strand
Strand 2	A	1596	1597	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1730	1734	first strand
Strand 2	A	1737	1743	anti-parallel
Strand 3	A	1746	1753	anti-parallel
Strand 4	A	1761	1768	anti-parallel
Strand 5	A	1690	1697	anti-parallel
Strand 6	A	1809	1814	anti-parallel
Strand 7	A	1825	1828	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1893	1898	first strand
Strand 2	A	1901	1907	anti-parallel
Strand 3	A	1944	1947	anti-parallel
Strand 4	A	1935	1939	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2145	first strand
Strand 2	A	2491	2497	anti-parallel
Strand 3	A	2469	2475	anti-parallel
Strand 4	A	2454	2461	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2152	2158	first strand
Strand 2	A	2166	2172	anti-parallel
Strand 3	A	2177	2183	anti-parallel
Strand 4	A	2188	2191	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2205	first strand
Strand 2	A	2214	2219	anti-parallel
Strand 3	A	2224	2227	anti-parallel
Strand 4	A	2236	2237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2249	first strand
Strand 2	A	2264	2267	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2303	first strand
Strand 2	A	2316	2319	anti-parallel
Strand 3	A	2322	2325	anti-parallel
Strand 4	A	2335	2337	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2358	first strand
Strand 2	A	2362	2367	anti-parallel
Strand 3	A	2372	2377	anti-parallel
Strand 4	A	2383	2388	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2419	first strand
Strand 2	A	2424	2429	anti-parallel
Strand 3	A	2434	2438	anti-parallel
Strand 4	A	2444	2448	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OXI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OXI