Analysis of interatomic Contacts of Structural Units in PDB entry:
9OXN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9OXN entry

There are 2 chains in PDB entry 9OXN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 47	ILE 685
B	MET 1	LYS 598

There are 53 helices in PDB entry 9OXN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	63	Right-handed alpha
Helix 2	AA2	A	67	72	Right-handed alpha
Helix 3	AA3	A	105	114	Right-handed alpha
Helix 4	AA4	A	122	140	Right-handed alpha
Helix 5	AA5	A	142	149	Right-handed alpha
Helix 6	AA6	A	153	169	Right-handed alpha
Helix 7	AA7	A	204	222	Right-handed alpha
Helix 8	AA8	A	266	270	Right-handed 310
Helix 9	AA9	A	273	277	Right-handed 310
Helix 10	AB1	A	280	288	Right-handed alpha
Helix 11	AB2	A	304	312	Right-handed alpha
Helix 12	AB3	A	313	317	Right-handed 310
Helix 13	AB4	A	321	325	Right-handed alpha
Helix 14	AB5	A	337	344	Right-handed alpha
Helix 15	AB6	A	390	397	Right-handed alpha
Helix 16	AB7	A	409	421	Right-handed alpha
Helix 17	AB8	A	426	435	Right-handed alpha
Helix 18	AB9	A	437	457	Right-handed alpha
Helix 19	AC1	A	460	469	Right-handed alpha
Helix 20	AC2	A	490	498	Right-handed alpha
Helix 21	AC3	A	499	512	Right-handed alpha
Helix 22	AC4	A	545	564	Right-handed alpha
Helix 23	AC5	A	566	570	Right-handed 310
Helix 24	AC6	A	599	611	Right-handed alpha
Helix 25	AC7	A	620	630	Right-handed alpha
Helix 26	AC8	A	639	643	Right-handed 310
Helix 27	AC9	A	676	681	Right-handed alpha
Helix 28	AD1	B	2	17	Right-handed alpha
Helix 29	AD2	B	18	29	Right-handed alpha
Helix 30	AD3	B	44	60	Right-handed alpha
Helix 31	AD4	B	62	81	Right-handed alpha
Helix 32	AD5	B	83	89	Right-handed alpha
Helix 33	AD6	B	93	100	Right-handed alpha
Helix 34	AD7	B	100	112	Right-handed alpha
Helix 35	AD8	B	142	157	Right-handed alpha
Helix 36	AD9	B	207	215	Right-handed alpha
Helix 37	AE1	B	231	238	Right-handed alpha
Helix 38	AE2	B	239	242	Right-handed 310
Helix 39	AE3	B	247	250	Right-handed 310
Helix 40	AE4	B	262	269	Right-handed alpha
Helix 41	AE5	B	320	327	Right-handed alpha
Helix 42	AE6	B	330	334	Right-handed 310
Helix 43	AE7	B	339	344	Right-handed alpha
Helix 44	AE8	B	351	366	Right-handed alpha
Helix 45	AE9	B	368	379	Right-handed alpha
Helix 46	AF1	B	381	386	Right-handed alpha
Helix 47	AF2	B	390	399	Right-handed alpha
Helix 48	AF3	B	420	428	Right-handed alpha
Helix 49	AF4	B	430	434	Right-handed 310
Helix 50	AF5	B	435	452	Right-handed alpha
Helix 51	AF6	B	482	498	Right-handed alpha
Helix 52	AF7	B	535	541	Right-handed alpha
Helix 53	AF8	B	565	569	Right-handed 310

There are 8 sheets in PDB entry 9OXN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	240	247	anti-parallel
Strand 4	A	227	233	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	291	294	anti-parallel
Strand 3	A	379	386	anti-parallel
Strand 4	A	366	374	anti-parallel
Strand 5	A	349	353	anti-parallel
Strand 6	A	326	330	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	532	537	anti-parallel
Strand 3	A	476	488	anti-parallel
Strand 4	A	574	588	anti-parallel
Strand 5	A	594	598	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	532	537	anti-parallel
Strand 3	A	476	488	anti-parallel
Strand 4	A	574	588	anti-parallel
Strand 5	A	616	619	parallel
Strand 6	A	656	658	anti-parallel
Strand 7	A	635	637	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	176	182	anti-parallel
Strand 4	B	162	168	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	219	221	anti-parallel
Strand 3	B	309	316	anti-parallel
Strand 4	B	296	304	anti-parallel
Strand 5	B	274	278	anti-parallel
Strand 6	B	252	256	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	463	first strand
Strand 2	B	469	474	anti-parallel
Strand 3	B	406	418	anti-parallel
Strand 4	B	510	523	anti-parallel
Strand 5	B	531	534	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	463	first strand
Strand 2	B	469	474	anti-parallel
Strand 3	B	406	418	anti-parallel
Strand 4	B	510	523	anti-parallel
Strand 5	B	553	556	parallel
Strand 6	B	590	597	anti-parallel
Strand 7	B	573	581	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9OXN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9OXN